RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ZNF596Q8TC21 504 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 CASTOR1Q8WTX7 329 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 C1orf159Q96HA4 380 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 SIRPDQ9H106 197 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 SSNA1O43805 119 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 S100GP29377 79 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 C1orf229Q6ZS94 237 aaPredicted RBP16.22■□□□□ 0.19
CLN3-205ENST00000359984 MAPK1IP1LQ8NDC0 245 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 HYLS1Q96M11 299 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 FOXC2Q99958 501 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 PRR13Q9NZ81 148 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 GAB2Q9UQC2 676 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 INSIG2Q9Y5U4 225 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 SAA2-SAA4A0A096LPE2 208 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 RAB29O14966 203 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 MSMBP08118 114 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 SAA2P0DJI9 122 aaPredicted RBP16.22■□□□□ 0.19
CLN3-205ENST00000359984 MMP9P14780 707 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 COX7A1P24310 79 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 SP6Q3SY56 376 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 RPL39P5Q59GN2 51 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 VMO1Q7Z5L0 202 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 TNFRSF14Q92956 283 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 GALNT14Q96FL9 552 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 CLEC7AQ9BXN2 247 aa16.22■□□□□ 0.19
CLN3-205ENST00000359984 UNKLQ9H9P5 680 aaKnown RBP16.22■□□□□ 0.19
CLN3-205ENST00000359984 B4DSR2 109 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 DUS4LO95620 317 aaKnown RBP16.21■□□□□ 0.19
CLN3-205ENST00000359984 IFNA2P01563 188 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 PNKDQ8N490 385 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 MITD1Q8WV92 249 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 TP53RKQ96S44 253 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 ZNF251Q9BRH9 671 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 PIPOXQ9P0Z9 390 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 KCNIP3Q9Y2W7 256 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 CSMD1Q96PZ7 3565 aa16.21■□□□□ 0.19
CLN3-205ENST00000359984 C3orf85A0A1B0GTC6 90 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 TOR1AO14656 332 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 OR5AC1P0C628 307 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 F2RP25116 425 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 PAX8Q06710 450 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 ANKRD55Q3KP44 614 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 HCP5Q6MZN7 132 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 KCTD9Q7L273 389 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 C12orf45Q8N5I9 185 aaPredicted RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 WFDC11Q8NEX6 87 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 OR13D1Q8NGV5 346 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 OR10X1Q8NGY0 326 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 OR51H1Q8NH63 302 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 ZNF436Q9C0F3 470 aaPredicted RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 HEXA-AS1Q9H8Q6 139 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 PRRC2AP48634 2157 aaKnown RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 TOX4O94842 621 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 IGLV1-47P01700 117 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 PRRX1P54821 245 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 RPL30P62888 115 aaKnown RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 KLRD1Q13241 179 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 LIN54Q6MZP7 749 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 C11orf88Q6PI97 169 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 UXS1Q8NBZ7 420 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 PCGF1Q9BSM1 259 aa16.2■□□□□ 0.18
CLN3-205ENST00000359984 RANBP3Q9H6Z4 567 aaPredicted RBP16.2■□□□□ 0.18
CLN3-205ENST00000359984 G3V3Q6 166 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 M0R1X1 148 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 LINC00205P59089 165 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 TMEM187Q14656 261 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 C9orf62Q8N4C0 152 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 OR11H4Q8NGC9 324 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 GLYATL2Q8WU03 294 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 TBX15Q96SF7 602 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 PHB2Q99623 299 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 WNK2Q9Y3S1 2297 aa16.19■□□□□ 0.18
CLN3-205ENST00000359984 HLA-DRB5Q30154 266 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 ZNF66Q6ZN08 573 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 LINC01356Q8N9X3 169 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 CCDC168Q8NDH2 2452 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 BEND2Q8NDZ0 799 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 OR11H6Q8NGC7 330 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 SLA2Q9H6Q3 261 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 LINC00473A8K010 186 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 ZNF16P17020 682 aaPredicted RBP16.18■□□□□ 0.18
CLN3-205ENST00000359984 DUTP33316 252 aaKnown RBP16.18■□□□□ 0.18
CLN3-205ENST00000359984 C2orf68Q2NKX9 166 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 ST6GALNAC6Q969X2 333 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 S1PR3Q99500 378 aa16.18■□□□□ 0.18
CLN3-205ENST00000359984 HSD17B10Q99714 261 aaKnown RBP16.18■□□□□ 0.18
CLN3-205ENST00000359984 RNF212BA8MTL3 300 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 H0Y980 276 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 RNASEK-C17orf49H0YIS7 233 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 HOXB4P17483 251 aaPredicted RBP16.17■□□□□ 0.18
CLN3-205ENST00000359984 DCAF12L2Q5VW00 463 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 ZNF833PQ6ZTB9 187 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 COQ8AQ8NI60 647 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 TCTEX1D2Q8WW35 142 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 MSI2Q96DH6 328 aaKnown RBP16.17■□□□□ 0.18
CLN3-205ENST00000359984 GON7Q9BXV9 100 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 TMEM222Q9H0R3 208 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 HIF1ANQ9NWT6 349 aa16.17■□□□□ 0.18
CLN3-205ENST00000359984 MGAT4CQ9UBM8 478 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms