RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 K7ESF4 209 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 CEBPDP49716 269 aaPredicted RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 TMEM78Q5T7P6 136 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 ARPC1AQ92747 370 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 DNAJC4Q9NNZ3 241 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 TRGV8A0A0C4DH27 118 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 ZG16O60844 167 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 SLC25A5P05141 298 aaKnown RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 KIR2DL1P43626 348 aaPredicted RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 KIR2DL2P43627 348 aaPredicted RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 R3HDM4Q96D70 268 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 ABHD14AQ9BUJ0 271 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 QTRT1Q9BXR0 403 aaKnown RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 MBNL1Q9NR56 388 aaKnown RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 SPANXB1Q9NS25 103 aaPredicted RBP3.49□□□□□ -1.85
USH2A-201ENST00000307340 CBLN4Q9NTU7 201 aa3.49□□□□□ -1.85
USH2A-201ENST00000307340 TRBV5-7A0A0A0MS05 114 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZNF98A6NK75 572 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 LINC00614P0C842 121 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 IBA57Q5T440 356 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 ANKRD37Q7Z713 158 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ALKBH7Q9BT30 221 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 RSRP1Q9BUV0 290 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 MRPL27Q9P0M9 148 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 RNF222A6NCQ9 220 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 KBTBD11O94819 623 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 NNATQ16517 81 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DEFB133Q30KQ1 61 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 TMEM177Q53S58 311 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 BCL6BQ8N143 479 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 LRRC75AQ8NAA5 344 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 SCCPDHQ8NBX0 429 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 FAM57AQ8TBR7 257 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 SEC22AQ96IW7 307 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 MGST2Q99735 147 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 MRM2Q9UI43 246 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 FOXH1O75593 365 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 RPL35P42766 123 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 HINT1P49773 126 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 CACNG7P62955 275 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DGCR2P98153 550 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.48□□□□□ -1.85
USH2A-201ENST00000307340 OR1N2Q8NGR9 330 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 A0A1B0GV50 99 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 TRGC2P03986 189 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 C6orf201Q7Z4U5 140 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZFP62Q8NB50 900 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 LOXL2Q9Y4K0 774 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 K7ESM1 405 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 CEACAM16Q2WEN9 425 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DCAF10Q5QP82 559 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZNF761Q86XN6 746 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 LINC00312Q9Y6C7 94 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 CNOT1A5YKK6 2376 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 ETHE1O95571 254 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 NMBP08949 121 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 LSM11P83369 360 aaKnown RBP eCLIP3.48□□□□□ -1.85
USH2A-201ENST00000307340 SGMS2Q8NHU3 365 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 THAP3Q8WTV1 239 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 OR2H1Q9GZK4 316 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ISG20L2Q9H9L3 353 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 SF3B6Q9Y3B4 125 aaKnown RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 IL17RELQ6ZVW7 336 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 TMEM230Q96A57 120 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DLL3Q9NYJ7 618 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 AGPAT2O15120 278 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZNF253O75346 499 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 AMY1AP04745 511 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 RNF7Q9UBF6 113 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ERRFI1Q9UJM3 462 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 LEPROTL1O95214 131 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 LHX8Q68G74 356 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZNF793Q6ZN11 406 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 BTLAQ7Z6A9 289 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 PRICKLE3O43900 615 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 TSPAN2O60636 221 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 MMP23AO75900 390 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZXDAP98168 799 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZXDBP98169 803 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 SPSB3Q6PJ21 355 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 LINC01555Q8NAE3 123 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 GATSQ8NAP1 163 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 SGK494Q96LW2 274 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DUSP13Q9UII6 198 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ACRP10323 421 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 RAB32Q13637 225 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ARHGAP5-AS1Q96IT6 56 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 DNAL4O96015 105 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 CRYBA1P05813 215 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 SLC7A5P1Q8MH63 180 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 FAM221AA4D161 298 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 IGKV3-11P04433 115 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 TNFAIP6P98066 277 aaPredicted RBP3.48□□□□□ -1.85
USH2A-201ENST00000307340 TBC1D26Q86UD7 250 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 ZNF441Q8N8Z8 693 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 C1QTNF5Q9BXJ0 243 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 A0A0G2JK05 382 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 A0A1W2PRE2 83 aa3.48□□□□□ -1.85
USH2A-201ENST00000307340 NDUFB8O95169 186 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms