RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Lmntd1Q9D4C1 413 aa13.73□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Ckap5A2AGT5 2032 aaKnown RBP13.73□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Prrt2E9PUL5 346 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr248E9Q1L6 309 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Abcd4O89016 606 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Fam219bQ14DQ1 197 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Cbln2Q8BGU2 224 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Lrp11Q8CB67 483 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Eif3iQ9QZD9 325 aaKnown RBP13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Syt6Q9R0N8 511 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr1335B2RVY8 335 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Zfp229E9PWT2 705 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Tesk1O70146 627 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 FasP25446 327 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Clec12bQ149M0 275 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Ctf1Q60753 203 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Nabp1Q8BGW5 198 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Slc17a5Q8BN82 495 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr770Q8VGC2 311 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr641Q8VGX6 312 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Kcnk5Q9JK62 502 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Bcl3Q9Z2F6 448 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Gm35060A0A140LIV7 231 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Birc7A2AWP0 285 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Zfp942B8JJA7 486 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Lin7cO88952 197 aaKnown RBP13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Egr3P43300 387 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 NacaP70670 2187 aaKnown RBP13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Zfp867E9Q2M4 473 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Vmn1r121K7N6J4 314 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 GzmaP11032 260 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 CamlgP49070 294 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr335-psQ7TRY6 312 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Negr1Q80Z24 348 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Cdadc1Q8BMD5 523 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Vrk3Q8K3G5 453 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Stard10Q9JMD3 291 aa13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Baz2aQ91YE5 1889 aaKnown RBP13.72□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 2010315B03RikJ3QK55 433 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Mcpt9O35164 246 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Gdf1P20863 357 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Rps23P62267 143 aaKnown RBP13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 RanP62827 216 aaKnown RBP13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Foxs1Q61574 329 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 SspnQ62147 216 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr827Q8VEV5 322 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Spsb1Q9D5L7 273 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Gm13547A2ARC0 163 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Zfp944E9PUS4 492 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Gm3486L7N2D0 199 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Tnfrsf1aP25118 454 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Tle1Q62440 770 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 RalyQ64012 312 aaKnown RBP13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Bhlhe23Q8BGW3 223 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 SdhaQ8K2B3 664 aaKnown RBP13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Plekha3Q9ERS4 297 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Fbp1Q9QXD6 338 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Plp2Q9R1Q7 152 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Ighv1-13A0A075B5I0 98 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr1496B9EHG2 317 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Gm14288E9Q9W0 88 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Timp1P12032 205 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Ube2g2P60605 165 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Wfdc18P62810 74 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr90Q0VEL5 310 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Olfr1042Q7TR81 313 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 ApehQ8R146 732 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Mib2Q8R516 973 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Slc31a2Q9CPU9 143 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Rab5aQ9CQD1 215 aa13.71□□□□□ -0.21
Ccdc88b-201ENSMUST00000113440 Ighv6-5A0A0A6YWS9 119 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Igkv1-135A0A0B4J1H7 120 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr936J3KMV2 267 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tgfbr3O88393 850 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Lgals3P16110 264 aaKnown RBP13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 CapgP24452 352 aaKnown RBP13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Bloc1s3Q5U5M8 195 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr1396Q7TQS8 315 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Ykt6Q9CQW1 198 aa13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Nova1Q9JKN6 507 aaKnown RBP13.71□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm5890A0A140LI04 305 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zfp13P10754 512 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rac3P60764 192 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 ArsgQ3TYD4 525 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rnase11Q5GAM9 192 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zbtb49Q8BXX2 756 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mllt1Q9ERL0 547 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 StrapQ9Z1Z2 350 aaKnown RBP13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Esp6A8R0U0 136 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr739E9Q1P0 309 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr62L7MU75 315 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Ube2zQ3UE37 356 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Trav5d-4Q5R1F6 114 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tmem56Q8CGF5 276 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Sco2Q8VCL2 255 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mrgpra4Q91WW2 313 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mrps16Q9CPX7 135 aaKnown RBP13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mpc2Q9D023 127 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 4933402D24RikQ9D4D3 167 aa13.7□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr1490A0A1L1SVH0 321 aa13.7□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 39.9 ms