RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 TMEM56Q96MV1 263 aa14.28□□□□□ -0.12
PHGDH-234ENST00000642041 TMEM106BQ9NUM4 274 aa14.28□□□□□ -0.12
PHGDH-234ENST00000642041 LIN7CQ9NUP9 197 aaKnown RBP14.28□□□□□ -0.12
PHGDH-234ENST00000642041 TAS2R3Q9NYW6 316 aa14.28□□□□□ -0.12
PHGDH-234ENST00000642041 KIF25Q9UIL4 384 aa14.28□□□□□ -0.12
PHGDH-234ENST00000642041 UBE2J1Q9Y385 318 aaPredicted RBP14.28□□□□□ -0.12
PHGDH-234ENST00000642041 TMEM56-RWDD3S4R434 201 aa14.28□□□□□ -0.12
PHGDH-234ENST00000642041 NOTCH1P46531 2555 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF729A6NN14 1252 aaPredicted RBP14.27□□□□□ -0.13
PHGDH-234ENST00000642041 H0Y980 276 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 TMEM178BH3BS89 294 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 L7N2F9 121 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 YPEL1O60688 119 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 SLC25A6P12236 298 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 AESQ08117 197 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 TMEM187Q14656 261 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 HERPUD1Q15011 391 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 CD300LFQ8TDQ1 290 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 SECTM1Q8WVN6 248 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 IL1F10Q8WWZ1 152 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 YPEL2Q96QA6 119 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 TMEM246Q9BRR3 403 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 TMEM222Q9H0R3 208 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 CBLN4Q9NTU7 201 aa14.27□□□□□ -0.13
PHGDH-234ENST00000642041 A0A1W2PPH5 198 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 SOD3P08294 240 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 CDKN1AP38936 164 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 CCL8P80075 99 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 SLC9A3R2Q15599 337 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 LRRC10Q5BKY1 277 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF546Q86UE3 836 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF695Q8IW36 515 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 C9orf62Q8N4C0 152 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF645Q8N7E2 425 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 ARL11Q969Q4 196 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 COQ2Q96H96 371 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 GAL3ST2Q9H3Q3 398 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 BARX1Q9HBU1 254 aaPredicted RBP14.26□□□□□ -0.13
PHGDH-234ENST00000642041 RDH8Q9NYR8 311 aa14.26□□□□□ -0.13
PHGDH-234ENST00000642041 IGHV1-69-2A0A0G2JMI3 117 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 C13orf42A0A1B0GVH6 325 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 FAM25EA8MYX2 175 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 C12orf77C9JDV5 145 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 F2RL2O00254 374 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 IFNA7P01567 189 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 HBZP02008 142 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 DANCRP0C864 163 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 PI3P19957 117 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 VDAC1P21796 283 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 F2RP25116 425 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 UCP1P25874 307 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 ARHGDIBP52566 201 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 EIF5AP63241 154 aaKnown RBP14.25□□□□□ -0.13
PHGDH-234ENST00000642041 LOXL1Q08397 574 aaPredicted RBP14.25□□□□□ -0.13
PHGDH-234ENST00000642041 CYB5R2Q6BCY4 276 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF66Q6ZN08 573 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 Q6ZPA2 131 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 BOLLQ8N9W6 283 aaKnown RBP14.25□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.25□□□□□ -0.13
PHGDH-234ENST00000642041 PPP1R1CQ8WVI7 109 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 NEUROG1Q92886 237 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 LINC00574Q9H8X3 128 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 OR2S2Q9NQN1 319 aa14.25□□□□□ -0.13
PHGDH-234ENST00000642041 IGHV4-30-2A0A087WSY4 118 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 IGKV1-6A0A0C4DH72 117 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 NDUFB3O43676 98 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 PGLYRP1O75594 196 aaPredicted RBP14.24□□□□□ -0.13
PHGDH-234ENST00000642041 LY86O95711 162 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 SERPINE2P07093 398 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 OR5AC1P0C628 307 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 S100A11P31949 105 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 ACOT7LQ6ZUV0 252 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 TBC1D26Q86UD7 250 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 GLYATL2Q8WU03 294 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 RBPMSQ93062 196 aaKnown RBP14.24□□□□□ -0.13
PHGDH-234ENST00000642041 HSD17B10Q99714 261 aaKnown RBP14.24□□□□□ -0.13
PHGDH-234ENST00000642041 PLCE1Q9P212 2302 aa14.24□□□□□ -0.13
PHGDH-234ENST00000642041 IGHV3-64DA0A0J9YX35 117 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 NDUFS7O75251 213 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 MPC2O95563 127 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 LYL1P12980 280 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 GLIPR1P48060 266 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 NKX2-5P52952 324 aaPredicted RBP14.23□□□□□ -0.13
PHGDH-234ENST00000642041 MST1LQ2TV78 715 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 ANKRD55Q3KP44 614 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 PHLDA2Q53GA4 152 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 THOC7Q6I9Y2 204 aaKnown RBP14.23□□□□□ -0.13
PHGDH-234ENST00000642041 PRSS54Q6PEW0 395 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 ZNF818PQ6ZRF7 136 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 FAM219AQ8IW50 185 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 LSM10Q969L4 123 aaKnown RBP14.23□□□□□ -0.13
PHGDH-234ENST00000642041 MSI2Q96DH6 328 aaKnown RBP14.23□□□□□ -0.13
PHGDH-234ENST00000642041 TIMD4Q96H15 378 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 MFFQ9GZY8 342 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 PLEKHA2Q9HB19 425 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 MAB21L2Q9Y586 359 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 LINC00312Q9Y6C7 94 aa14.23□□□□□ -0.13
PHGDH-234ENST00000642041 TRBV23-1A0A0A0MS06 115 aa14.22□□□□□ -0.13
PHGDH-234ENST00000642041 KBTBD11-OT1A0A1B0GTJ5 212 aa14.22□□□□□ -0.13
PHGDH-234ENST00000642041 C3orf80F5H4A9 247 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms