RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NKAIN3Q8N8D7 197 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 DLX4Q92988 240 aaPredicted RBP16.3■□□□□ 0.2
VPS53-216ENST00000574029 GALMQ96C23 342 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 RCHY1Q96PM5 261 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 CST11Q9H112 138 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 ALX4Q9H161 411 aaPredicted RBP16.3■□□□□ 0.2
VPS53-216ENST00000574029 TPSG1Q9NRR2 321 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 KIAA1456Q9P272 454 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 BLOC1S6Q9UL45 172 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 FBXO7Q9Y3I1 522 aa16.3■□□□□ 0.2
VPS53-216ENST00000574029 HUWE1Q7Z6Z7 4374 aaKnown RBP16.3■□□□□ 0.2
VPS53-216ENST00000574029 STAB2Q8WWQ8 2551 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 SOX15O60248 233 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 SAP30O75446 220 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 FAM71F2Q6NXP2 309 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 UQCC2Q9BRT2 126 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 TOLLIPQ9H0E2 274 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 IFI27L2Q9H2X8 130 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 GHRLQ9UBU3 117 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 LRRC42Q9Y546 428 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 SORL1Q92673 2214 aa16.29■□□□□ 0.2
VPS53-216ENST00000574029 LINC01619G3V211 115 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 SPNP16150 400 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 SLURP1P55000 103 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 HMGN3Q15651 99 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 ZNF660Q6AZW8 331 aaPredicted RBP16.28■□□□□ 0.2
VPS53-216ENST00000574029 MS4A15Q8N5U1 240 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 OR2AK2Q8NG84 335 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 FAM46BQ96A09 425 aa16.28■□□□□ 0.2
VPS53-216ENST00000574029 YTHDF1Q9BYJ9 559 aaKnown RBP16.28■□□□□ 0.2
VPS53-216ENST00000574029 PNMA8CA0A1B0GUJ8 204 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 A0A1W2PN81 502 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 LGALS1P09382 135 aaKnown RBP16.27■□□□□ 0.2
VPS53-216ENST00000574029 FRMD6-AS1P0C7T7 363 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 GP9P14770 177 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 CHRNA7P36544 502 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 MED22Q15528 200 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 ECSCRQ19T08 205 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 ACSM6Q6P461 480 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 OVCH2Q7RTZ1 564 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 TCTEX1D1Q8N7M0 179 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 THRSPQ92748 146 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 SULT4A1Q9BR01 284 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 FOXA2Q9Y261 457 aaPredicted RBP16.27■□□□□ 0.2
VPS53-216ENST00000574029 NUBP2Q9Y5Y2 271 aa16.27■□□□□ 0.2
VPS53-216ENST00000574029 IGHV4OR15-8A0A075B7B6 117 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 A0A087WW49 117 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 RRHO14718 337 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 MRPS14O60783 128 aaKnown RBP16.26■□□□□ 0.19
VPS53-216ENST00000574029 EGR2P11161 476 aaPredicted RBP16.26■□□□□ 0.19
VPS53-216ENST00000574029 GABARAPL2P60520 117 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 CX3CL1P78423 397 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 TPBGQ13641 420 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 FAM131AQ6UXB0 335 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 OR6Q1Q8NGQ2 317 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 CCDC90BQ9GZT6 254 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 GHITMQ9H3K2 345 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 FBXL15Q9H469 300 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 PIPOXQ9P0Z9 390 aa16.26■□□□□ 0.19
VPS53-216ENST00000574029 CT45A6P0DMU7 189 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 CT45A5P0DMU8 189 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 CT45A7P0DMV0 189 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 CD200R1LQ6Q8B3 271 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 CASTOR1Q8WTX7 329 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 NEDD4LQ96PU5 975 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 FAAP24Q9BTP7 215 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 ABRACLQ9P1F3 81 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 STEAP1Q9UHE8 339 aa16.25■□□□□ 0.19
VPS53-216ENST00000574029 OR5H14A6NHG9 310 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 FCN1O00602 326 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 RAB29O14966 203 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 ST8SIA5O15466 376 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 OR8U9P0C7N5 309 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 UBBP0CG47 229 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 MAPK3P27361 379 aaPredicted RBP16.24■□□□□ 0.19
VPS53-216ENST00000574029 TBCEQ15813 527 aaPredicted RBP16.24■□□□□ 0.19
VPS53-216ENST00000574029 ZNF880Q6PDB4 577 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 SVOPQ8N4V2 548 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 IL1F10Q8WWZ1 152 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 ARPC1AQ92747 370 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 SLC23A1Q9UHI7 598 aa16.24■□□□□ 0.19
VPS53-216ENST00000574029 TRIM64CA6NLI5 447 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 NAPSAO96009 420 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 MC5RP33032 325 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 MAP2K4P45985 399 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 RPS27AP62979 156 aaKnown RBP16.23■□□□□ 0.19
VPS53-216ENST00000574029 TMEM267Q0VDI3 215 aaPredicted RBP16.23■□□□□ 0.19
VPS53-216ENST00000574029 MLLT11Q13015 90 aaPredicted RBP16.23■□□□□ 0.19
VPS53-216ENST00000574029 ACSM3Q53FZ2 586 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 RPL39P5Q59GN2 51 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 PYHIN1Q6K0P9 492 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 C6orf201Q7Z4U5 140 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 UFD1Q92890 307 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 ZMAT4Q9H898 229 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 A3GALT2U3KPV4 340 aa16.23■□□□□ 0.19
VPS53-216ENST00000574029 H0YJW9 148 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 HSPB1P04792 205 aaKnown RBP16.22■□□□□ 0.19
VPS53-216ENST00000574029 CPEP16870 476 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 PLGLAQ15195 96 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 AKIRIN2Q53H80 203 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms