RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KIAA1456Q9P272 454 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 STEAP1Q9UHE8 339 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 SLC23A1Q9UHI7 598 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 SORL1Q92673 2214 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 TRBV6-6A0A0A6YYG2 114 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 ITGB1BP1O14713 200 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 RAB29O14966 203 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 SLC22A1O15245 554 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 ST8SIA5O15466 376 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 CT45A6P0DMU7 189 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 CT45A5P0DMU8 189 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 CT45A7P0DMV0 189 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 RCN1Q15293 331 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 OGFRL1Q5TC84 451 aaPredicted RBP13.26□□□□□ -0.29
CLN3-216ENST00000565316 FAM131AQ6UXB0 335 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 ZNF429Q86V71 674 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 OR5B12Q96R08 314 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 AGMATQ9BSE5 352 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 GHITMQ9H3K2 345 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 FBXO7Q9Y3I1 522 aa13.26□□□□□ -0.29
CLN3-216ENST00000565316 OR5H14A6NHG9 310 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 TMEM14DPA8MWL7 114 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 RRHO14718 337 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 SOX15O60248 233 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 EGR2P11161 476 aaPredicted RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 SRMP19623 302 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 CX3CL1P78423 397 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 GABPB1Q06547 395 aaPredicted RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 RPL39P5Q59GN2 51 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 MOB1BQ7L9L4 216 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 TCTEX1D1Q8N7M0 179 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 IL1F10Q8WWZ1 152 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 DCUN1D4Q92564 292 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 ASCL2Q99929 193 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 NICN1Q9BSH3 213 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 MND1Q9BWT6 205 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 PARP12Q9H0J9 701 aaKnown RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 RIMS4Q9H426 269 aaPredicted RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 TPSG1Q9NRR2 321 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 LSM2Q9Y333 95 aaKnown RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 NUBP2Q9Y5Y2 271 aa13.25□□□□□ -0.29
CLN3-216ENST00000565316 DYNC2H1Q8NCM8 4307 aaKnown RBP13.25□□□□□ -0.29
CLN3-216ENST00000565316 A0A0A6YYD4 124 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 H0YJW9 148 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 FCN1O00602 326 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 OVOL1O14753 267 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 CASQ2O14958 399 aaPredicted RBP13.24□□□□□ -0.29
CLN3-216ENST00000565316 RBBP9O75884 186 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 BPNT1O95861 308 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 CDK1P06493 297 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 MC5RP33032 325 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 RBM48Q5RL73 367 aaKnown RBP13.24□□□□□ -0.29
CLN3-216ENST00000565316 CD200R1LQ6Q8B3 271 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 OR5AN1Q8NGI8 311 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 RNF5Q99942 180 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 TMED9Q9BVK6 235 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 TOLLIPQ9H0E2 274 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 ALX4Q9H161 411 aaPredicted RBP13.24□□□□□ -0.29
CLN3-216ENST00000565316 KCNK15Q9H427 330 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 FBXL15Q9H469 300 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 FOXA2Q9Y261 457 aaPredicted RBP13.24□□□□□ -0.29
CLN3-216ENST00000565316 SMAD5-AS1Q9Y6J3 95 aa13.24□□□□□ -0.29
CLN3-216ENST00000565316 UCHL1P09936 223 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 ECSCRQ19T08 205 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 HSD17B12Q53GQ0 312 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 CEACAM19Q7Z692 300 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 FAM89BQ8N5H3 189 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 OR6M1Q8NGM8 313 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 DLX4Q92988 240 aaPredicted RBP13.23□□□□□ -0.29
CLN3-216ENST00000565316 LPAR5Q9H1C0 372 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 CHMP1AQ9HD42 196 aaPredicted RBP13.23□□□□□ -0.29
CLN3-216ENST00000565316 ISYNA1Q9NPH2 558 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 PLEKHJ1Q9NW61 149 aa13.23□□□□□ -0.29
CLN3-216ENST00000565316 A0A1W2PN81 502 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 FOXI3A8MTJ6 420 aaPredicted RBP13.22□□□□□ -0.29
CLN3-216ENST00000565316 LINC01619G3V211 115 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 C3orf84H3BNL1 204 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 LY86O95711 162 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 LGALS1P09382 135 aaKnown RBP13.22□□□□□ -0.29
CLN3-216ENST00000565316 CHRNA7P36544 502 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 TMEM267Q0VDI3 215 aaPredicted RBP13.22□□□□□ -0.29
CLN3-216ENST00000565316 SPHARQ15513 63 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 GLDNQ6ZMI3 551 aaPredicted RBP13.22□□□□□ -0.29
CLN3-216ENST00000565316 PTX4Q96A99 478 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 ABHD14BQ96IU4 210 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 C11orf54Q9H0W9 315 aaPredicted RBP13.22□□□□□ -0.29
CLN3-216ENST00000565316 WASHC3Q9Y3C0 194 aa13.22□□□□□ -0.29
CLN3-216ENST00000565316 PROP1O75360 226 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 SLURP1P55000 103 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 IRF3Q14653 427 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 AKIRIN2Q53H80 203 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 PYHIN1Q6K0P9 492 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 ZNF562Q6V9R5 426 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 EDARADDQ8WWZ3 215 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 GFI1Q99684 422 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 OR1A1Q9P1Q5 309 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 AK3Q9UIJ7 227 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 HSF4Q9ULV5 492 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 MGAT4AQ9UM21 535 aa13.21□□□□□ -0.29
CLN3-216ENST00000565316 GAB2Q9UQC2 676 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms