RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	RNF150	Q9ULK6	438 aa		12.5	□□□□□ -0.41
DDX55-209	ENST00000542286		A8MWP6	167 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286		K7N7A8	449 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	LINC00205	P59089	165 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	RND3	P61587	244 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	PPP1CB	P62140	327 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	GNMT	Q14749	295 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	ZNF573	Q86YE8	665 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	OR13D1	Q8NGV5	346 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	MRPL37	Q9BZE1	423 aa	Known RBP	12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	CHST1	O43916	411 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	TUSC2	O75896	110 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	PSG7	Q13046	419 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286		Q6P435	159 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	OR5C1	Q8NGR4	320 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	OR5R1	Q8NH85	324 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	OR10J5	Q8NHC4	309 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	PLPPR2	Q96GM1	343 aa		12.49	□□□□□ -0.41
DDX55-209	ENST00000542286	WDR1	O75083	606 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	SRP19	P09132	144 aa	Known RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	NUTF2	P61970	127 aa	Known RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	TMEM267	Q0VDI3	215 aa	Predicted RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	MPV17L	Q2QL34	196 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	ZNF324B	Q6AW86	544 aa	Predicted RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	SLC25A31	Q9H0C2	315 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	ZDHHC11	Q9H8X9	412 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	MSL2	Q9HCI7	577 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	PLSCR2	Q9NRY7	297 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	KCNS2	Q9ULS6	477 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	RBM7	Q9Y580	266 aa	Known RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	HSPA12A	O43301	675 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	CDS2	O95674	445 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	GLIPR1	P48060	266 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	DYNLT3	P51808	116 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	UBE2N	P61088	152 aa	Known RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	TBC1D28	Q2M2D7	210 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	GPR157	Q5UAW9	335 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	PRAMEF6	Q5VXH4	476 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	SNIP1	Q8TAD8	396 aa	Known RBP	12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	SIRT7	Q9NRC8	400 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	TAAR3P	Q9P1P4	343 aa		12.48	□□□□□ -0.41
DDX55-209	ENST00000542286	NXPH2	O95156	264 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IGLV2-14	P01704	120 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	FTH1P19	P0C7X4	201 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	CEACAM6	P40199	344 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	FABP6	P51161	128 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	REL	Q04864	619 aa	Predicted RBP	12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	NMS	Q5H8A3	153 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	ZNF664	Q8N3J9	261 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TMEM252	Q8N6L7	170 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	CYB561D1	Q8N8Q1	229 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	C9orf106	Q8NAJ2	232 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TVP23C	Q96ET8	276 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM210B	Q96KR6	192 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TMEM56	Q96MV1	263 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	CDH20	Q9HBT6	801 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TRAPPC2L	Q9UL33	140 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TMEM56-RWDD3	S4R434	201 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	CHD3	Q12873	2000 aa	Known RBP	12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	MUC6	Q6W4X9	2439 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	KIR2DS1	A0A191URI9	304 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	PSPN	O60542	156 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IGKV1-39	P01597	117 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IGKV1D-39	P04432	117 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IAPP	P10997	89 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	SFTPC	P11686	197 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	ATP6V0C	P27449	155 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	KIR2DS4	P43632	304 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	KIR2DS1	Q14954	304 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	SAXO1	Q8IYX7	474 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	RAB24	Q969Q5	203 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	LOXL4	Q96JB6	756 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	NIPSNAP3B	Q9BS92	247 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	ATG101	Q9BSB4	218 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	NDUFAF3	Q9BU61	184 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	OBP2B	Q9NPH6	170 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	MPC1	Q9Y5U8	109 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	RPS16	P62249	146 aa	Known RBP	12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	HLA-DRB3	P79483	266 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IL24	Q13007	206 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	IL13RA2	Q14627	380 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	SPSB3	Q6PJ21	355 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	TMEM178A	Q8NBL3	297 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	GPR146	Q96CH1	333 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	SNX22	Q96L94	193 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	C11orf1	Q9H5F2	150 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	METRN	Q9UJH8	293 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	OR2W1	Q9Y3N9	320 aa		12.47	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A10P	A6NDY2	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A18P	A6NE21	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A16P	A6NEW6	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A20P	A6NIJ5	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A8P	A6NJQ4	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A7P	A6NKC0	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A22P	A8MWA6	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A12P	A8MX19	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A5P	A8MXJ8	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A23P	A8MXZ1	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A15P	P0C7V4	464 aa		12.46	□□□□□ -0.41
DDX55-209	ENST00000542286	FAM90A13P	P0C7W8	464 aa		12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms