RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 M0R036 132 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 RAB29O14966 203 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 GPR37O15354 613 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 PPIHO43447 177 aaKnown RBP12.44□□□□□ -0.42
NUP54-217ENST00000514987 CLDN14O95500 239 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 IGHV3-13P01766 116 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 CRYAAP02489 173 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 MT-ND4LP03901 98 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 P0C879 139 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 TIMP3P35625 211 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 TNFRSF9Q07011 255 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 IZUMO4Q1ZYL8 232 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 LRRC75BQ2VPJ9 315 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 KHDC3LQ587J8 217 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 SEM1Q6ZVN7 128 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 LILRB2Q8N423 598 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 OR2Z1Q8NG97 314 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 OR10G4Q8NGN3 311 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 MRGPRDQ8TDS7 321 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 SFT2D1Q8WV19 159 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 MUCL1Q96DR8 90 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 CIB3Q96Q77 187 aaPredicted RBP12.44□□□□□ -0.42
NUP54-217ENST00000514987 NCOR1P1Q9H4R4 102 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 RAB9BQ9NP90 201 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 BIN3Q9NQY0 253 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 MGST3O14880 152 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 NDUFA2O43678 99 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 CLDN1O95832 211 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 SNRNP70P08621 437 aaKnown RBP12.43□□□□□ -0.42
NUP54-217ENST00000514987 METTL15P1P0C7V9 234 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 IAPPP10997 89 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 GLRXP35754 106 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 RAB13P51153 203 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 RPS23P62266 143 aaKnown RBP12.43□□□□□ -0.42
NUP54-217ENST00000514987 RUNX1Q01196 453 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 TCTEX1D2Q8WW35 142 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 SNX22Q96L94 193 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 ABHD14AQ9BUJ0 271 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 SFXN3Q9BWM7 321 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 FZR1Q9UM11 496 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 TIMM9Q9Y5J7 89 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 MEX3AA1L020 520 aaKnown RBP12.43□□□□□ -0.42
NUP54-217ENST00000514987 LRRC30A6NM36 301 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 CRYBA1P05813 215 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 OR13C7P0DN81 318 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 GLIPR1P48060 266 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 KLF3P57682 345 aaPredicted RBP12.43□□□□□ -0.42
NUP54-217ENST00000514987 RAB5BP61020 215 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 CR1LQ2VPA4 569 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 KRTCAP3Q53RY4 240 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 TMEM14EPQ6UXP3 125 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 MBD3L1Q8WWY6 194 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 C14orf79Q96F83 325 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 RBKSQ9H477 322 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 JPT1Q9UK76 154 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 KLF2Q9Y5W3 355 aaPredicted RBP12.43□□□□□ -0.42
NUP54-217ENST00000514987 DMDP11532 3685 aa12.43□□□□□ -0.42
NUP54-217ENST00000514987 OTOGLQ3ZCN5 2332 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 FAM90A9PA6NNJ1 464 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 ZNF737O75373 536 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 SRP19P09132 144 aaKnown RBP12.42□□□□□ -0.42
NUP54-217ENST00000514987 ZNF83P51522 516 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 CCL20P78556 96 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 SPANXN5Q5MJ07 72 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 ZNF808Q8N4W9 903 aaPredicted RBP12.42□□□□□ -0.42
NUP54-217ENST00000514987 CD177Q8N6Q3 437 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 OR13A1Q8NGR1 328 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 CLCC1Q96S66 551 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 RARRES2Q99969 163 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 MRPL37Q9BZE1 423 aaKnown RBP12.42□□□□□ -0.42
NUP54-217ENST00000514987 RFNGQ9Y644 331 aa12.42□□□□□ -0.42
NUP54-217ENST00000514987 A0A1B0GV50 99 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 MED19A0JLT2 244 aaPredicted RBP12.41□□□□□ -0.42
NUP54-217ENST00000514987 C15orf65H3BRN8 121 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 M0R1B8 84 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 KRASP01116 189 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 HOXA1P49639 335 aaPredicted RBP12.41□□□□□ -0.42
NUP54-217ENST00000514987 SELENOVP59797 346 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 RPL30P62888 115 aaKnown RBP12.41□□□□□ -0.42
NUP54-217ENST00000514987 SLC38A11Q08AI6 406 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 AKIRIN2Q53H80 203 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 H2BFWTQ7Z2G1 175 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 CENPVQ7Z7K6 275 aaPredicted RBP12.41□□□□□ -0.42
NUP54-217ENST00000514987 CLDND2Q8NHS1 167 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 S100PBPQ96BU1 408 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 WDR61Q9GZS3 305 aaKnown RBP12.41□□□□□ -0.42
NUP54-217ENST00000514987 DUSP13Q9UII6 198 aa12.41□□□□□ -0.42
NUP54-217ENST00000514987 ODAMA1E959 279 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 C1orf196B1AJZ1 125 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 YPEL1O60688 119 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 RAMP3O60896 148 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 SSTR5P35346 364 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 G6PCP35575 357 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 NKX6-1P78426 367 aaPredicted RBP12.4□□□□□ -0.42
NUP54-217ENST00000514987 ARL16Q0P5N6 197 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 PMS2P11Q13670 270 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 ICAM4Q14773 271 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 TMEM41BQ5BJD5 291 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 ZNF474Q6S9Z5 364 aaPredicted RBP12.4□□□□□ -0.42
NUP54-217ENST00000514987 HAPLN4Q86UW8 402 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms