RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NAT8Q9UHE5 227 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FKBP2P26885 142 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 AMTP48728 403 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ELOBQ15370 118 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SLC25A47Q6Q0C1 308 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DMBX1Q8NFW5 382 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR5AU1Q8NGC0 362 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GCM1Q9NP62 436 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DSPP15924 2871 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 A8MWP6 167 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DEFB108AA8MXU0 73 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TUSC2O75896 110 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HSPB1P04792 205 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LINC00614P0C842 121 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CRISP2P16562 243 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF708P17019 499 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PMELP40967 661 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HINT1P49773 126 aaPredicted RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PRDX4Q13162 271 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 RAB35Q15286 201 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TBC1D28Q2M2D7 210 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ACY3Q96HD9 319 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 RIMS4Q9H426 269 aaPredicted RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 VAX2Q9UIW0 290 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ANKHD1Q8IWZ3 2542 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CDIPTO14735 213 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DEDDO75618 318 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IL2RAP01589 272 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR5G3P0C626 314 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FUT3P21217 361 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FAM3BP58499 235 aaPredicted RBP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SELENOVP59797 346 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 RUNX1Q01196 453 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 EWSR1Q01844 656 aaKnown RBP eCLIP9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ROM1Q03395 351 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 BAXQ07812 192 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DEGS2Q6QHC5 323 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C16orf82Q7Z2V1 217 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LYZL2Q7Z4W2 148 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 R3HDM4Q96D70 268 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR2J1Q9GZK6 312 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PRDM13Q9H4Q3 707 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PPP1R3CQ9UQK1 317 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CCDC168Q8NDH2 2452 aa9.26□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DUXBA0A1W2PPF3 345 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SPRY3O43610 288 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CLDN1O95832 211 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NUBP1P53384 320 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 BTNL3Q6UXE8 466 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GTF2H5Q6ZYL4 71 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HSPB9Q9BQS6 159 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C5orf66Q9H5L9 145 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CYTL1Q9NRR1 136 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DENND4AQ7Z401 1863 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TRAV17A0A0B4J275 112 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TRGV8A0A0C4DH27 118 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C21orf140B9A014 251 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF737O75373 536 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NPBWR2P48146 333 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 COL10A1Q03692 680 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF260Q3ZCT1 412 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SPANXN5Q5MJ07 72 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MDP1Q86V88 176 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OSR2Q8N2R0 312 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MOB1AQ9H8S9 216 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 F6UZH7 168 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NEURL1O76050 574 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NPSP0C0P6 89 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DYNLT3P51808 116 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZDHHC23Q8IYP9 409 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DMDP11532 3685 aa9.25□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MAP1AP78559 2803 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DEGS1O15121 323 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 AMBPP02760 352 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TFF1P04155 84 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IAPPP10997 89 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF133P52736 654 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZP4Q12836 540 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF826PQ6ZT77 177 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SARAFQ96BY9 339 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NAA60Q9H7X0 242 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SRD5A3Q9H8P0 318 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF581Q9P0T4 197 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TRBV5-7A0A0A0MS05 114 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IGHV3-43A0A0B4J1X8 118 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SERPINE3A8MV23 424 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 E9PLN8 166 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 H0Y8G0 127 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IGHV3-43DP0DP04 118 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HLA-GP17693 338 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ANOS1P23352 680 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MST1LQ2TV78 715 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C10orf91Q5T1B1 145 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 POC1AQ8NBT0 407 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SNHG12Q9BXW3 62 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IL36RNQ9UBH0 155 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ARL2-SNX15V9GYD0 113 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LRRC3CA6NJW4 275 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 KIAA1324LA8MWY0 1029 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 BTF3P20290 206 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 258.3 ms