RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 H2BFWTQ7Z2G1 175 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 OR1P1Q8NH06 330 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 CCDC74BQ96LY2 380 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 TICRRQ7Z2Z1 1910 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-27A0A075B6S5 117 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1B0GV90 55 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 QDPRP09417 244 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 TVP23CQ96ET8 276 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 NPFFR1Q9GZQ6 430 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF703Q9H7S9 590 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1W2PNR3 127 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 FGF5P12034 268 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ASCL1P50553 236 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 SPATA46Q5T0L3 261 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 TEX38Q6PEX7 206 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 CXorf67Q86X51 503 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF439Q8NDP4 499 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 RAB1BQ9H0U4 201 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 PXMP4Q9Y6I8 212 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 IGHV2OR16-5A0A0B4J2B6 119 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1D-33P01593 117 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-33P01594 117 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 NDUFB7P17568 137 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 THBS3P49746 956 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF774Q6NX45 483 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 LINC01551Q86U37 167 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CYB561D1Q8N8Q1 229 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 SPACA9Q96E40 222 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF2Q9BSG1 426 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 SFXN3Q9BWM7 321 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PRDM14Q9GZV8 571 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 AK3Q9UIJ7 227 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TRBV23-1A0A0A0MS06 115 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 RBFOX2O43251 390 aaKnown RBP eCLIP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 MMP7P09237 267 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CTXN2P0C2S0 81 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 DUSP1P28562 367 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CYB561P49447 251 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PSMB3P49720 205 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PLPPR5Q32ZL2 321 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TIPARPQ7Z3E1 657 aaKnown RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 OR10G9Q8NGN4 311 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 FNDC10F2Z333 226 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 IGLV2-14P01704 120 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 BRWD1-AS2P59051 145 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TNFRSF9Q07011 255 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CLEC12BQ2HXU8 276 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 THNSL2Q86YJ6 484 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 WDR31Q8NA23 367 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 NIPSNAP3BQ9BS92 247 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TMEM106BQ9NUM4 274 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 WIPI2Q9Y4P8 454 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 A0A087X0M5 115 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1B0GX30 115 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TRGC2P03986 189 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 AKR1C3P42330 323 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 GNG10P50151 68 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 POU2AF1Q16633 256 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 HLA-BQ31612 363 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 NCMAPQ5T1S8 102 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 GFI1BQ5VTD9 330 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 LINC00596Q86U02 117 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 OR4F5Q8NH21 305 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PIFOQ8TCI5 191 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 OR4F4Q96R69 305 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 WNT5BQ9H1J7 359 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 Q9N2K0 584 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 FUT9Q9Y231 359 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 LSM4Q9Y4Z0 139 aaKnown RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 RAMP3O60896 148 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 AREGP15514 252 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PLA2G5P39877 138 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 PVRIGQ6DKI7 326 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 RHBDD2Q6NTF9 364 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 OR51H1Q8NH63 302 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 TMEM45BQ96B21 275 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 SLC45A2Q9UMX9 530 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CHTOPQ9Y3Y2 248 aaKnown RBP4.55□□□□□ -1.68
SYNE1-220ENST00000471834 LOC101059948A0A1B0GTJ6 334 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 C9orf172C9J069 976 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 FTH1P19P0C7X4 201 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 CR1LQ2VPA4 569 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 MRGPRDQ8TDS7 321 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 SLC37A2Q8TED4 501 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 RITA1Q96K30 269 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 SLC35D1Q9NTN3 355 aa4.55□□□□□ -1.68
SYNE1-220ENST00000471834 UBE2L5PA0A1B0GUS4 154 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 LNP1A1A4G5 178 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SYNGR3O43761 229 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PPYP01298 95 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ARG1P05089 322 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CLDN15P56746 228 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 BSXQ3C1V8 233 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SPATA12Q7Z6I5 190 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 VASH2Q86V25 355 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GCNT2Q8N0V5 402 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GJC3Q8NFK1 279 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 DDA1Q9BW61 102 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 C1QTNF5Q9BXJ0 243 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PLA2G2FQ9BZM2 168 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms