RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SGCAQ16586 387 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 KCTD21Q4G0X4 260 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 XKR7Q5GH72 579 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 PRAMEF5Q5TYX0 476 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 PRAMEF6Q5VXH4 476 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SLC25A48Q6ZT89 311 aaKnown RBP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 LINC00173Q6ZV60 143 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 UTS2BQ765I0 119 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 WDR86Q86TI4 376 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 TGIF2LXQ8IUE1 241 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SLC22A9Q8IVM8 553 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 ENTHD1Q8IYW4 607 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 Q8N402 240 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 AKR7LQ8NHP1 331 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 MYOZ3Q8TDC0 251 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 ITFG2Q969R8 447 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SGK3Q96BR1 496 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 UBE2E2Q96LR5 201 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 QKIQ96PU8 341 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 CCL13Q99616 98 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 RARRES2Q99969 163 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SHCBP1LQ9BZQ2 653 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 C1orf198Q9H425 327 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 UBQLN4Q9NRR5 601 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 KAAG1Q9UBP8 84 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 TBL2Q9Y4P3 447 aaKnown RBP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 IGHV3OR15-7A0A075B7D8 119 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 TRAV38-1A0A0B4J264 116 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 FAM240BA0A1B0GVZ2 78 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ODF3BA8MYP8 253 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 M0QZK8 103 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 PSTPIP1O43586 416 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 SMC2O95347 1197 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 CST1P01037 141 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 IGHG2P01859 326 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ARG1P05089 322 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 GZMAP12544 262 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 PSMB8P28062 276 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ERFP50548 548 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 CCNG1P51959 295 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 SUB1P53999 127 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 OR12D2P58182 307 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ERVK-25P63136 954 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ECH1Q13011 328 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 UAP1Q16222 522 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 RFX4Q33E94 735 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 C8orf74Q6P047 294 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 TIFABQ6ZNK6 161 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 BZW1Q7L1Q6 419 aaKnown RBP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 TCF24Q7RTU0 167 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 MTERF4Q7Z6M4 381 aaKnown RBP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 SLC35E3Q7Z769 313 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 LHFPL3Q86UP9 236 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 C10orf111Q8N326 155 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 FAM216BQ8N7L0 139 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 OR5W2Q8NH69 310 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ZNRF2Q8NHG8 242 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 MARCH1Q8TCQ1 289 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 NELFBQ8WX92 580 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 STMN2Q93045 179 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 PPP1R14BQ96C90 147 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 LRRC45Q96CN5 670 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 HAUS1Q96CS2 278 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 SH3GL3Q99963 347 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 PRSS27Q9BQR3 290 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 MRPL47Q9HD33 250 aaKnown RBP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 CHRAC1Q9NRG0 131 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 POFUT2Q9Y2G5 429 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 CSDC2Q9Y534 153 aaKnown RBP2.39□□□□□ -2.03
VPS13A-210ENST00000471439 MDN1Q9NU22 5596 aa2.39□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF726A6NNF4 738 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 H3BSA7 217 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 YEATS4O95619 227 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 PTHP01270 115 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 IGHV1-8P0DP01 117 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 IGHV3-43DP0DP04 118 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 IGFBP3P17936 291 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-210ENST00000471439 APLNRP35414 380 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 CXCL5P42830 114 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 NMUP48645 174 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 RORCP51449 518 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 PAX5Q02548 391 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 TSNQ15631 228 aaKnown RBP2.38□□□□□ -2.03
VPS13A-210ENST00000471439 LCE1CQ5T751 118 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 AGBL2Q5U5Z8 902 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 LRRC74BQ6ZQY2 392 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 Q6ZSR3 168 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 CDH26Q8IXH8 852 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR5AS1Q8N127 324 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 Q8N9L7 120 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 HSD17B11Q8NBQ5 300 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR4K5Q8NGD3 323 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR10G9Q8NGN4 311 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR11L1Q8NGX0 322 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR2G3Q8NGZ4 309 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR2G2Q8NGZ5 317 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 OR6X1Q8NH79 312 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 PLPPR1Q8TBJ4 325 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 GPR151Q8TDV0 419 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms