RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RALYQ9UKM9 306 aaKnown RBP7.36□□□□□ -1.23
USP40-203ENST00000427112 CLEC18AA5D8T8 446 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 H0Y8G0 127 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 DFFBO76075 338 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PAX9P55771 341 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 HLA-DRB3P79483 266 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 TFF3Q07654 80 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 ZNF726P1Q15940 193 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 LHFPL4Q7Z7J7 247 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 CLEC18CQ8NCF0 446 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PACRGQ96M98 296 aaPredicted RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 DERL1Q9BUN8 251 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 ANGPTL4Q9BY76 406 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 FUT9Q9Y231 359 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 LRRC3CA6NJW4 275 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 CEACAM18A8MTB9 384 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 K7ESF4 209 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 TAS2R60P59551 318 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 SRSF6Q13247 344 aaKnown RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 C10orf128Q5T292 105 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PRAMEF6Q5VXH4 476 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 TOMM20LQ6UXN7 152 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 ZNF66Q6ZN08 573 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 C11orf42Q8N5U0 333 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 FAM122AQ96E09 287 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 SLC25A31Q9H0C2 315 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PRO3102Q9H379 93 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 RIMS4Q9H426 269 aaPredicted RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 Q9N2K0 584 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 LYRM2Q9NU23 88 aaPredicted RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 LRBAP50851 2863 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 GRIFINA4D1Z8 144 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 OR6C6A6NF89 314 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 RPL36A-HNRNPH2H7BZ11 118 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 CYB5R3P00387 301 aaPredicted RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 IGKV1D-33P01593 117 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 IGKV1-33P01594 117 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 IGHV3-48P01763 117 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 S100GP29377 79 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PRB3Q04118 309 aaPredicted RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 FAM201AQ5SY85 155 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 DBX2Q6ZNG2 339 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 TCF23Q7RTU1 214 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 C16orf82Q7Z2V1 217 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 WDR5BQ86VZ2 330 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 OR2Y1Q8NGV0 311 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 CT55Q8WUE5 264 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 WDYHV1Q96HA8 205 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 RCC1LQ96I51 464 aaKnown RBP7.35□□□□□ -1.23
USP40-203ENST00000427112 BTF3L4Q96K17 158 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 OR2D2Q9H210 308 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 ANAPC10Q9UM13 185 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 PAM16Q9Y3D7 125 aa7.35□□□□□ -1.23
USP40-203ENST00000427112 TRAV24A0A0B4J272 114 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 LOC102725191A0A1B0GVB3 256 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 OR5H1A6NKK0 313 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ANKRD30BLA7E2S9 258 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 PPIHO43447 177 aaKnown RBP7.34□□□□□ -1.23
USP40-203ENST00000427112 PAGE4O60829 102 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 VAMP5O95183 116 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 IGKV1-39P01597 117 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 IGKV1D-39P04432 117 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 SFTPCP11686 197 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 F2RP25116 425 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 SPCS3P61009 180 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 PLP2Q04941 152 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 TMEM108Q6UXF1 575 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 SMIM15Q7Z3B0 74 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 DEFB108BQ8NET1 73 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 CLDND2Q8NHS1 167 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 METTL1Q9UBP6 276 aaKnown RBP7.34□□□□□ -1.23
USP40-203ENST00000427112 TCFL5Q9UL49 500 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 NAV3Q8IVL0 2385 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ANKRD11Q6UB99 2663 aaPredicted RBP7.34□□□□□ -1.23
USP40-203ENST00000427112 ZG16O60844 167 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ZNF737O75373 536 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 IGHV2-5P01817 119 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 VDAC1P21796 283 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 OTX1P32242 354 aaPredicted RBP7.34□□□□□ -1.23
USP40-203ENST00000427112 SSTR5P35346 364 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 WNT5AP41221 380 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 PMS2P11Q13670 270 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ABHD17BQ5VST6 288 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 PPP1R32Q7Z5V6 425 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 FAM58AQ8N1B3 248 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ZNF709Q8N972 641 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 SSMEM1Q8WWF3 244 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 GALNT14Q96FL9 552 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 DLL3Q9NYJ7 618 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 DUSP13Q9UII6 198 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 DYSFO75923 2080 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 ZGRF1Q86YA3 2104 aa7.34□□□□□ -1.23
USP40-203ENST00000427112 IGHV3OR15-7A0A075B7D8 119 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 SYNGR2O43760 224 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 CST2P09228 141 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 MYOD1P15172 320 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 TFPI2P48307 235 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 B3GALT5-AS1P59052 145 aa7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms