RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 COMMD1Q8N668 190 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 TMEM252Q8N6L7 170 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 C1orf162Q8NEQ5 155 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-202ENST00000374876 RNASE11Q8TAA1 199 aaKnown RBP13.03□□□□□ -0.32
CCDC40-202ENST00000374876 C19orf12Q9NSK7 152 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 SLC25A15Q9Y619 301 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 NXPH3O95157 252 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 PSG2P11465 335 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 EPHA1P21709 976 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 FHITP49789 147 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 TESK1Q15569 626 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 OR14J1Q9UGF5 321 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 ABCA4P78363 2273 aa13.02□□□□□ -0.32
CCDC40-202ENST00000374876 DEFB108AA8MXU0 73 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-202ENST00000374876 CHST1O43916 411 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 HAND1O96004 215 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 SNCAP37840 140 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 NPBWR1P48145 328 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 ZNF83P51522 516 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 TMEM182Q6ZP80 229 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-202ENST00000374876 CBLN2Q8IUK8 224 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 OR8G5Q8NG78 346 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 UBALD1Q8TB05 177 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 AKR1E2Q96JD6 320 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 KCNS2Q9ULS6 477 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 PPP1R3CQ9UQK1 317 aa13.02□□□□□ -0.33
CCDC40-202ENST00000374876 A0A1B0GU03 582 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 KRTAP10-9P60411 292 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 BAXQ07812 192 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 OR5C1Q8NGR4 320 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 PLPPR2Q96GM1 343 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 MBNL3Q9NUK0 354 aaKnown RBP13.01□□□□□ -0.33
CCDC40-202ENST00000374876 WIPI2Q9Y4P8 454 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-202ENST00000374876 C9JQL5 133 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 ATP6V1G2-DDX39BF2Z307 99 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 CST7O76096 145 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 ACAA1P09110 424 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-202ENST00000374876 WNT2P09544 360 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 SLC25A6P12236 298 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 PEA15Q15121 130 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 DHRS7BQ6IAN0 325 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-202ENST00000374876 FAM122CQ6P4D5 195 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 FAM213BQ8TBF2 198 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 GPR146Q96CH1 333 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 C14orf79Q96F83 325 aa13.01□□□□□ -0.33
CCDC40-202ENST00000374876 SETXQ7Z333 2677 aaKnown RBP13.01□□□□□ -0.33
CCDC40-202ENST00000374876 A0A0G2JRQ6 117 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 FAM157AC9JC47 383 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 MLNRO43193 412 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 TIMM8AO60220 97 aaPredicted RBP13□□□□□ -0.33
CCDC40-202ENST00000374876 TMEM50AO95807 157 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 IGLV2-14P01704 120 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 CEACAM6P40199 344 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 CEBPDP49716 269 aaPredicted RBP13□□□□□ -0.33
CCDC40-202ENST00000374876 PPT1P50897 306 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 DYNLT3P51808 116 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 HMGN3Q15651 99 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 GUK1Q16774 197 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 TMEM217Q8N7C4 229 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 OR2G3Q8NGZ4 309 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 TMEM171Q8WVE6 324 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 EIF5A2Q9GZV4 153 aaKnown RBP13□□□□□ -0.33
CCDC40-202ENST00000374876 CXXC4Q9H2H0 198 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 HES4Q9HCC6 221 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 KCNIP1Q9NZI2 227 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 UNC79Q9P2D8 2635 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 FBN2P35556 2912 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 A0A1W2PPR1 153 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 TMEM30CPA0ZSE6 113 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 DPRXA6NFQ7 191 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 A6NLC8 198 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 M0R1B8 84 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 PLAUP00749 431 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 CECR9P0C854 216 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 ZNF16P17020 682 aaPredicted RBP13□□□□□ -0.33
CCDC40-202ENST00000374876 TUBG1P23258 451 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 ATP6V0CP27449 155 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 TUBG2Q9NRH3 451 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 LIN7CQ9NUP9 197 aaKnown RBP13□□□□□ -0.33
CCDC40-202ENST00000374876 RNF115Q9Y4L5 304 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 KPTNQ9Y664 436 aa13□□□□□ -0.33
CCDC40-202ENST00000374876 CADP27708 2225 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 HEXAP06865 529 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 LOXP28300 417 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-202ENST00000374876 BSPH1Q075Z2 132 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 ZNF826PQ6ZT77 177 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 BCL2L14Q9BZR8 327 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 FZR1Q9UM11 496 aa12.99□□□□□ -0.33
CCDC40-202ENST00000374876 UMAD1C9J7I0 102 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 H7C2Y5 167 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 K7N7A8 449 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 WNT9BO14905 357 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 PSPNO60542 156 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 GCH1P30793 250 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 FABP6P51161 128 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 RPL23AP62750 156 aaKnown RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 NCMAPQ5T1S8 102 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 STX12Q86Y82 276 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms