RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RPL39P5Q59GN2 51 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 ABHD14BQ96IU4 210 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 AGMATQ9BSE5 352 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 SLC2A2P11168 524 aaPredicted RBP14.45□□□□□ -0.1
CLN3-202ENST00000355477 IGLL1P15814 213 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 CD33P20138 364 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 RANBP1P43487 201 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 ACTBP60709 375 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 RPL23AP62750 156 aaKnown RBP14.45□□□□□ -0.1
CLN3-202ENST00000355477 RAB3CQ96E17 227 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 C11orf54Q9H0W9 315 aaPredicted RBP14.45□□□□□ -0.1
CLN3-202ENST00000355477 TXNL4BQ9NX01 149 aaKnown RBP14.45□□□□□ -0.1
CLN3-202ENST00000355477 PIPOXQ9P0Z9 390 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 MGAT4AQ9UM21 535 aa14.45□□□□□ -0.1
CLN3-202ENST00000355477 RAB27BO00194 218 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 ITGB1BP1O14713 200 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 RAB29O14966 203 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 PF4P02776 101 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 CT45A6P0DMU7 189 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 CT45A5P0DMU8 189 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 CT45A7P0DMV0 189 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 ZBTB25P24278 435 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 FGF9P31371 208 aaPredicted RBP14.44□□□□□ -0.1
CLN3-202ENST00000355477 SOX6P35712 828 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 SLC35B1P78383 322 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 MMDQ15546 238 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 ZNF773Q6PK81 442 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 ETV3LQ6ZN32 361 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 LCNL1Q6ZST4 164 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 OR10R2Q8NGX6 335 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 FCGR1BQ92637 280 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 RNF150Q9ULK6 438 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 STUB1Q9UNE7 303 aa14.44□□□□□ -0.1
CLN3-202ENST00000355477 TRDCB7Z8K6 153 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 HSPA12AO43301 675 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 PROP1O75360 226 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 GNB3P16520 340 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 RAB6AP20340 208 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 PNLIPRP3Q17RR3 467 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 FAM71F2Q6NXP2 309 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 TEX38Q6PEX7 206 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 FAM131AQ6UXB0 335 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 GLDNQ6ZMI3 551 aaPredicted RBP14.43□□□□□ -0.1
CLN3-202ENST00000355477 COMMD1Q8N668 190 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 PHF21AQ96BD5 680 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 ZFP57Q9NU63 452 aa14.43□□□□□ -0.1
CLN3-202ENST00000355477 ZNF107Q9UII5 783 aaPredicted RBP14.43□□□□□ -0.1
CLN3-202ENST00000355477 A0A075B6Q4 140 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 MFNGO00587 321 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 RPLP1P05386 114 aaKnown RBP14.42□□□□□ -0.1
CLN3-202ENST00000355477 CD3GP09693 182 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 CFHR3Q02985 330 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 C8orf86Q6ZUL3 223 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 LINC00482Q8N8I6 264 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 NPBQ8NG41 125 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 PTX4Q96A99 478 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 OR51E2Q9H255 320 aa14.42□□□□□ -0.1
CLN3-202ENST00000355477 NBR2O15453 112 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 IGF1P05019 195 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 FCGR3AP08637 254 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 HIST1H1DP16402 221 aaKnown RBP14.41□□□□□ -0.1
CLN3-202ENST00000355477 THBS3P49746 956 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 LINC00205P59089 165 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 C5orf64Q2M2E5 130 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 IGSF11Q5DX21 431 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 FOXB2Q5VYV0 432 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 MRPL41Q8IXM3 137 aaKnown RBP14.41□□□□□ -0.1
CLN3-202ENST00000355477 OR4A4PQ8NGN8 299 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 EDARADDQ8WWZ3 215 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 MAFIPQ8WZ33 124 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 GON7Q9BXV9 100 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 GHITMQ9H3K2 345 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 RDH8Q9NYR8 311 aa14.41□□□□□ -0.1
CLN3-202ENST00000355477 ZNF230Q9UIE0 474 aaPredicted RBP14.41□□□□□ -0.1
CLN3-202ENST00000355477 ELF5Q9UKW6 265 aaPredicted RBP14.41□□□□□ -0.1
CLN3-202ENST00000355477 RRP15Q9Y3B9 282 aaKnown RBP14.41□□□□□ -0.1
CLN3-202ENST00000355477 NOTOA8MTQ0 251 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 NUDT19A8MXV4 375 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 H0YJW9 148 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 FABP7O15540 132 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 RRP9O43818 475 aaKnown RBP14.4□□□□□ -0.1
CLN3-202ENST00000355477 GSTT2P0CG29 244 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 GSTT2BP0CG30 244 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 GADD45AP24522 165 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 FOXE3Q13461 319 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 RNF152Q8N8N0 203 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 DRAXINQ8NBI3 349 aaPredicted RBP14.4□□□□□ -0.1
CLN3-202ENST00000355477 KLHL30-AS1Q8NEE0 82 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 OR5AN1Q8NGI8 311 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 ATG5Q9H1Y0 275 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 RNF167Q9H6Y7 350 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 SSR3Q9UNL2 185 aa14.4□□□□□ -0.1
CLN3-202ENST00000355477 IGHV7-81A0A0B4J1V7 117 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 METTL21EPA6NDL7 271 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 OR5H14A6NHG9 310 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 NDUFA3O95167 84 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 IGHG4P01861 327 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 HLA-DRB1P01911 266 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 SNRPBP14678 240 aaKnown RBP14.39□□□□□ -0.11
CLN3-202ENST00000355477 MRPS15P82914 257 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 170.3 ms