RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 PRR27Q6MZM9 219 aa3.96□□□□□ -1.77
VPS13C-201ENST00000249837 DPPA3Q6W0C5 159 aa3.96□□□□□ -1.77
VPS13C-201ENST00000249837 MRPL13Q9BYD1 178 aaKnown RBP3.96□□□□□ -1.77
VPS13C-201ENST00000249837 PMS2P1A4D2B8 440 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SHISA7A6NL88 538 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 PROB1E7EW31 1015 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 OR10J4P0C629 311 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 NUDT16L1Q9BRJ7 211 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 GGACTQ9BVM4 153 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 WDR54Q9H977 334 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 COLCA2A8K830 154 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 RRP8O43159 456 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 MPZP25189 248 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 B2MP61769 119 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SLC23A3Q6PIS1 610 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 UBALD2Q8IYN6 164 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 RCC1LQ96I51 464 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 LRFN3Q9BTN0 628 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 TOX3O15405 576 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SNRPCP09234 159 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ZNF25P17030 456 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 TPPP2P59282 170 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SSPNQ14714 243 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 FAM166AQ6J272 317 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 MARS2Q96GW9 593 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 PROCRQ9UNN8 238 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 NOTCH2Q04721 2471 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 C20orf202A1L168 122 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 FCN1O00602 326 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 F2RP25116 425 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ARL3P36405 182 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ZNF818PQ6ZRF7 136 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 Q8IYB0 196 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 PACRGQ96M98 296 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 HES4Q9HCC6 221 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 IGKV1D-13A0A0B4J2D9 117 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 EFNA2O43921 213 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 TRGC1P0CF51 173 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 IGKV1-13P0DP09 117 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 TMEM11P17152 192 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 FGF12P61328 243 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 BOD1Q96IK1 185 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 MPC1Q9Y5U8 109 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 LOC102723971A0A1B0GUV8 181 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ATXN7O15265 892 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 CNIH1O95406 144 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 LINC00271P0C7V0 271 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 DTD1Q8TEA8 209 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SMDT1Q9H4I9 107 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 CLCF1Q9UBD9 225 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 H0Y980 276 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ATP6V1FQ16864 119 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 RNASEKQ6P5S7 137 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 CMTM2Q8TAZ6 248 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 DCTN5Q9BTE1 182 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 VAMP8Q9BV40 100 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 SF3B5Q9BWJ5 86 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 METTL1Q9UBP6 276 aaKnown RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 AUP1Q9Y679 476 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 COL4A3Q01955 1670 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 HBZP02008 142 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 COX6A1P12074 109 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 IER3P46695 156 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 KCNMB1Q16558 191 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 MST1LQ2TV78 715 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 ZNF385CQ66K41 422 aaPredicted RBP3.96□□□□□ -1.78
VPS13C-201ENST00000249837 PAM16Q9Y3D7 125 aa3.96□□□□□ -1.78
VPS13C-201ENST00000249837 GLIPR1P48060 266 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 CSRP2Q16527 193 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 C10orf128Q5T292 105 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 RAB24Q969Q5 203 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 PITPNC1Q9UKF7 332 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 LOC390937A0A1W2PQ73 354 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 LINC01387J3KSC0 135 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 GNG4P50150 75 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 UCP3P55916 312 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 TMEM251Q8N6I4 163 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 OR1L6Q8NGR2 347 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 TMEM54Q969K7 222 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 R3HDM4Q96D70 268 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 CXXC4Q9H2H0 198 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 DLL3Q9NYJ7 618 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 CD5P06127 495 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 FAM157CP0CG43 387 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 TAS2R45P59539 299 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 GFI1BQ5VTD9 330 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 H1FOOQ8IZA3 346 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 SETD2Q9BYW2 2564 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 PGLYRP1O75594 196 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 NDUFB4O95168 129 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 SUB1P53999 127 aaKnown RBP eCLIP3.95□□□□□ -1.784e-6■■■■■ 28.5
VPS13C-201ENST00000249837 FGF5P12034 268 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 ADCYAP1P18509 176 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 MRPS11P82912 194 aaKnown RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 RIPPLY2Q5TAB7 128 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 OR5B3Q8NH48 314 aa3.95□□□□□ -1.78
VPS13C-201ENST00000249837 KIAA1324LA8MWY0 1029 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 SRSF10O75494 262 aaKnown RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 ERHP84090 104 aaKnown RBP3.95□□□□□ -1.78
VPS13C-201ENST00000249837 MEF2BQ02080 365 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms