RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 C2CD3Q4AC94 2353 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 KIAA2026Q5HYC2 2103 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 IGHV3-43A0A0B4J1X8 118 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 FAM172BPA6NC97 362 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 A6NHS1 94 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 TRIM77I1YAP6 450 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 GSTT2P0CG29 244 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 GSTT2BP0CG30 244 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 IGHV3-43DP0DP04 118 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 BRS3P32247 399 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 PPP1CCP36873 323 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 CEACAM6P40199 344 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 GNG10P50151 68 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 SSX2Q16385 188 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 LRRC75BQ2VPJ9 315 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 CT45A1Q5HYN5 189 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 TPTE2P1Q5T6R2 138 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 PYHIN1Q6K0P9 492 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 FAM71F2Q6NXP2 309 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 LIAT1Q6ZQX7 453 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 LHFPL4Q7Z7J7 247 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 IZUMO1Q8IYV9 350 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 OR8H3Q8N146 312 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 OR10V1Q8NGI7 309 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 CT45A3Q8NHU0 189 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 GPX8Q8TED1 209 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 LEAP2Q969E1 77 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 RPEQ96AT9 228 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 DIRAS2Q96HU8 199 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 IFT46Q9NQC8 304 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 PIPOXQ9P0Z9 390 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 ANAPC10Q9UM13 185 aa13.4□□□□□ -0.26
SHKBP1-219ENST00000599575 IGKV1-6A0A0C4DH72 117 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 GAPDHP04406 335 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 NAT1P18440 290 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 SSBP1Q04837 148 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 ZNF816Q0VGE8 651 aaPredicted RBP13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 HERPUD1Q15011 391 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 TOMM40LQ969M1 308 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 ST6GALNAC6Q969X2 333 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 GINS4Q9BRT9 223 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 ABCB10Q9NRK6 738 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 PITPNC1Q9UKF7 332 aa13.39□□□□□ -0.27
SHKBP1-219ENST00000599575 ATRQ13535 2644 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 DNAJC9-AS1A6NH13 148 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 RAB29O14966 203 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 BET1O15155 118 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 CTDSPLO15194 276 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 HOXA3O43365 443 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 RNASE1P07998 156 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 PTBP1P26599 531 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ZNF134P52741 427 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 TAS2R46P59540 309 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ARPC4P59998 168 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ACTBP60709 375 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ACTG1P63261 375 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 GNMTQ14749 295 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 SLC9A3R2Q15599 337 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 KRTAP21-3Q3LHN1 58 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 IGSF11Q5DX21 431 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 LDLRAD2Q5SZI1 272 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 LINC00299Q6ZSB3 139 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 SNX29P2Q8IUI4 249 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ZDHHC22Q8N966 263 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 OR5AP2Q8NGF4 316 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 SSX3Q99909 188 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 RAB18Q9NP72 206 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 NECAP2Q9NVZ3 263 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 RDH8Q9NYR8 311 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 ZNF107Q9UII5 783 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 GAB2Q9UQC2 676 aa13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 SOX21Q9Y651 276 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-219ENST00000599575 MDFIC2A0A1B0GVS7 189 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 GABARAPH6UMI1 98 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 HSD17B6O14756 317 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 LANCL1O43813 399 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 SLC22A5O76082 557 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 IGHV3-7P01780 117 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 TNFSF8P32971 234 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 RCVRNP35243 200 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 UBA52P62987 128 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 UTF1Q5T230 341 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 FOXB2Q5VYV0 432 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 PRIMA1Q86XR5 153 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 THNSL2Q86YJ6 484 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 DTX3Q8N9I9 347 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 C17orf50Q8WW18 174 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 FCAMRQ8WWV6 532 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 MAFIPQ8WZ33 124 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 S1PR3Q99500 378 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 AGMATQ9BSE5 352 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 OR1A1Q9P1Q5 309 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 VPREB3Q9UKI3 123 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 HILPDAQ9Y5L2 63 aa13.37□□□□□ -0.27
SHKBP1-219ENST00000599575 IGKV1D-8A0A087WSZ0 117 aa13.36□□□□□ -0.27
SHKBP1-219ENST00000599575 FABP12A6NFH5 140 aa13.36□□□□□ -0.27
SHKBP1-219ENST00000599575 RBBP9O75884 186 aa13.36□□□□□ -0.27
SHKBP1-219ENST00000599575 VENTXO95231 258 aa13.36□□□□□ -0.27
SHKBP1-219ENST00000599575 TBPP20226 339 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms