RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SULT1A1P50225 295 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 LYZL4Q96KX0 146 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 OR2V2Q96R30 315 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 RSG1Q9BU20 258 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 MYOZ1Q9NP98 299 aaPredicted RBP13.97□□□□□ -0.17
CUX1-213ENST00000549414 DOK5Q9P104 306 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 RNF7Q9UBF6 113 aa13.97□□□□□ -0.17
CUX1-213ENST00000549414 DVL1O14640 695 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 CLEC3BP05452 202 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 OR5D13Q8NGL4 314 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 FGFBP3Q8TAT2 258 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 SLC35D1Q9NTN3 355 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 OTOGLQ3ZCN5 2332 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 C7orf77A4D0Y5 90 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 TSTD3H0UI37 97 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 REG1BP48304 166 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 UBE2G1P62253 170 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 Q9N2K0 584 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 CA11O75493 328 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 CLDN14O95500 239 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 MELTFP08582 738 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 HKR1P10072 659 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 THBS3P49746 956 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 FHITP49789 147 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 TAS2R45P59539 299 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 KCNMB1Q16558 191 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 RSRP1Q9BUV0 290 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 WIPI2Q9Y4P8 454 aa13.96□□□□□ -0.17
CUX1-213ENST00000549414 PLXNA2O75051 1894 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 ZNF320A2RRD8 509 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 PRSS44E7EML9 344 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 WNT9BO14905 357 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 RTP5Q14D33 572 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 ZNF818PQ6ZRF7 136 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 TMEM147Q9BVK8 224 aa13.96□□□□□ -0.18
CUX1-213ENST00000549414 CHRNA7P36544 502 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 CDC34P49427 236 aaPredicted RBP13.95□□□□□ -0.18
CUX1-213ENST00000549414 ITLN1Q8WWA0 313 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 APELAP0DMC3 54 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 OPRK1P41145 380 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 RAB7AP51149 207 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 VWA1Q6PCB0 445 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 TRAT1Q6PIZ9 186 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 BTNL8Q6UX41 500 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 RTN4RL2Q86UN3 420 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 OR4S2Q8NH73 311 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 TP53RKQ96S44 253 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 CCL13Q99616 98 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 LOC390937A0A1W2PQ73 354 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 FAM74A7A6NL05 159 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 NTN3O00634 580 aaPredicted RBP13.95□□□□□ -0.18
CUX1-213ENST00000549414 SEC11BP0C7V7 166 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 FAM74A3Q4VXF1 159 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 NSUN5P2Q63ZY6 315 aa13.95□□□□□ -0.18
CUX1-213ENST00000549414 A0A1B0GU03 582 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 COX7A2P2O60397 106 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 SPINK4O60575 86 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 PGLYRP1O75594 196 aaPredicted RBP13.94□□□□□ -0.18
CUX1-213ENST00000549414 RAB13P51153 203 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 NAAAQ02083 359 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 TMEM37Q8WXS4 190 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 ZNF251Q9BRH9 671 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 TMEM210A6NLX4 147 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 ZNF708P17019 499 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 PUSL1Q8N0Z8 303 aaKnown RBP13.94□□□□□ -0.18
CUX1-213ENST00000549414 NRIP2Q9BQI9 281 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 HES4Q9HCC6 221 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 IGLV3-32A0A0A0MS00 114 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 CDX4O14627 284 aaPredicted RBP13.94□□□□□ -0.18
CUX1-213ENST00000549414 ZIC4Q8N9L1 334 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 CELA3BP08861 270 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 PTGDSP41222 190 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 ACSM6Q6P461 480 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 LEAP2Q969E1 77 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 MISP3Q96FF7 219 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 GAL3ST2Q9H3Q3 398 aa13.94□□□□□ -0.18
CUX1-213ENST00000549414 AURKAIP1Q9NWT8 199 aaPredicted RBP13.94□□□□□ -0.18
CUX1-213ENST00000549414 LRRC3CA6NJW4 275 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 RPS2P15880 293 aaKnown RBP13.93□□□□□ -0.18
CUX1-213ENST00000549414 P2RY6Q15077 328 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 GABRA6Q16445 453 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 STPG2Q8N412 459 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 SEC11CQ9BY50 192 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 PARP11Q9NR21 331 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 ZNF883P0CG24 379 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 VMA21Q3ZAQ7 101 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 TLNRD1Q9H1K6 362 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 SH3BGRL3Q9H299 93 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 A0A0A6YYD4 124 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 TRAV38-1A0A0B4J264 116 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 MFSD2BA6NFX1 497 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 GLIPR1P48060 266 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 GPR146Q96CH1 333 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 ZNF835Q9Y2P0 537 aa13.93□□□□□ -0.18
CUX1-213ENST00000549414 ZNF716A6NP11 495 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 SULT1A2P50226 295 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 LINC00596Q86U02 117 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 POC1AQ8NBT0 407 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 RPEQ96AT9 228 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 RAB1BQ9H0U4 201 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms