RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 STRAPQ9Y3F4 350 aaKnown RBP12.54□□□□□ -0.4
DDX55-209ENST00000542286 ELOA3CA0A087WX78 387 aaPredicted RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 IGSF23A1L1A6 192 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 ST8SIA3O43173 380 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 P2RY1P47900 373 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 UBE2KP61086 200 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 RNPS1Q15287 305 aaKnown RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 NRN1LQ496H8 165 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 PCSK4Q6UW60 755 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 TMEM182Q6ZP80 229 aaPredicted RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 FAM58AQ8N1B3 248 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 FER1L6-AS2Q96M78 137 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 TRIB1Q96RU8 372 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 OR14J1Q9UGF5 321 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 ERRFI1Q9UJM3 462 aaPredicted RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 PTBP3O95758 552 aaKnown RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 SELENOHQ8IZQ5 122 aaKnown RBP12.53□□□□□ -0.4
DDX55-209ENST00000542286 OR5A2Q8NGI9 324 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 OR4D5Q8NGN0 318 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 PLPPR1Q8TBJ4 325 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 CA5BP1Q8WTZ4 195 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 DLL3Q9NYJ7 618 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 CEP295Q9C0D2 2601 aa12.53□□□□□ -0.4
DDX55-209ENST00000542286 IGHV1-2P23083 117 aa12.52□□□□□ -0.4
DDX55-209ENST00000542286 CCL20P78556 96 aa12.52□□□□□ -0.4
DDX55-209ENST00000542286 TMEM171Q8WVE6 324 aa12.52□□□□□ -0.4
DDX55-209ENST00000542286 WASF3Q9UPY6 502 aa12.52□□□□□ -0.4
DDX55-209ENST00000542286 A0A1B0GWJ7 208 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 CDRT15L2A8MXV6 281 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 TRDCB7Z8K6 153 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 WNT9BO14905 357 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 TRGC1P0CF51 173 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 ZNF16P17020 682 aaPredicted RBP12.52□□□□□ -0.41
DDX55-209ENST00000542286 IL2RGP31785 369 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 DLK1P80370 383 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 RUNX1Q01196 453 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 EWSR1Q01844 656 aaKnown RBP eCLIP12.52□□□□□ -0.41
DDX55-209ENST00000542286 VWA1Q6PCB0 445 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 LFNGQ8NES3 379 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 Q8NFD4 153 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 PACRGQ96M98 296 aaPredicted RBP12.52□□□□□ -0.41
DDX55-209ENST00000542286 TECTBQ96PL2 329 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 PPP1R3CQ9UQK1 317 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 TP53TG5Q9Y2B4 290 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 PHOX2AO14813 284 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 SNRPCP09234 159 aaKnown RBP12.52□□□□□ -0.41
DDX55-209ENST00000542286 MPV17P39210 176 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 HNF4GQ14541 408 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 HAGHQ16775 308 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 AKR1C8PQ5T2L2 129 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 CCDC71LQ8N9Z2 235 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 ABHD5Q8WTS1 349 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 PARD6AQ9NPB6 346 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 GLRX2Q9NS18 164 aa12.52□□□□□ -0.41
DDX55-209ENST00000542286 A0A1B0GW64 132 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 RBFOX3A6NFN3 312 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 PAX1P15863 534 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 GNG3P63215 75 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 FOXF2Q12947 444 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 OR8G1Q15617 311 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 CYB5R2Q6BCY4 276 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 ODF3L1Q8IXM7 274 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 LRTM2Q8N967 370 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 SCCPDHQ8NBX0 429 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 SLC25A40Q8TBP6 338 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 OR51I2Q9H344 312 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 ATP23Q9Y6H3 246 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 A0A087WWC5 75 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 DEGS1O15121 323 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 GPR137BO60478 399 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 PSG2P11465 335 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 NKX2-1P43699 371 aaPredicted RBP12.51□□□□□ -0.41
DDX55-209ENST00000542286 TNFSF10P50591 281 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 UCP3P55916 312 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 C4orf17Q53FE4 359 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 TPRX1Q8N7U7 411 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 FRZBQ92765 325 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 BOD1Q96IK1 185 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 SMDT1Q9H4I9 107 aa12.51□□□□□ -0.41
DDX55-209ENST00000542286 UNKLQ9H9P5 680 aaKnown RBP12.51□□□□□ -0.41
DDX55-209ENST00000542286 ACACAQ13085 2346 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 PLCE1Q9P212 2302 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 ATXN7O15265 892 aaPredicted RBP12.5□□□□□ -0.41
DDX55-209ENST00000542286 PGLYRP1O75594 196 aaPredicted RBP12.5□□□□□ -0.41
DDX55-209ENST00000542286 RAB4BP61018 213 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 RBMXL1Q96E39 390 aaKnown RBP12.5□□□□□ -0.41
DDX55-209ENST00000542286 POM121Q96HA1 1249 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 SMCO3A2RU48 225 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 MKRN2OSH3BPM6 223 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 SMPD2O60906 423 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 CNOT4O95628 575 aaKnown RBP12.5□□□□□ -0.41
DDX55-209ENST00000542286 OR2H2O95918 312 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 COX5BP10606 129 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 ZNF154Q13106 437 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 Q6ZRM9 215 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 ZNF429Q86V71 674 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 OR2C3Q8N628 320 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 HIST1H2BLQ99880 126 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 GP6Q9HCN6 339 aa12.5□□□□□ -0.41
DDX55-209ENST00000542286 FAM86C1Q9NVL1 165 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms