RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 C15orf54Q8N8G6 183 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 SCGB1C1Q8TD33 95 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 RBMXL1Q96E39 390 aaKnown RBP12.5□□□□□ -0.41
NUP54-217ENST00000514987 PARD6GQ9BYG4 376 aaPredicted RBP12.5□□□□□ -0.41
NUP54-217ENST00000514987 TUBA4BQ9H853 241 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 KIAA1456Q9P272 454 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 DKK4Q9UBT3 224 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 PRELID3BQ9Y3B1 194 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 IGHV1-18A0A0C4DH31 117 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 C12orf77C9JDV5 145 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 C3orf80F5H4A9 247 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 OR3A1P47881 315 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 TAAR6Q96RI8 345 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 PSENENQ9NZ42 101 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 LAMP3Q9UQV4 416 aa12.49□□□□□ -0.41
NUP54-217ENST00000514987 TRAV1-1A0A0B4J248 108 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 RBFOX3A6NFN3 312 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 HBZP02008 142 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 FABP6P51161 128 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 RTP5Q14D33 572 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 RHEBQ15382 184 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 AVPI1Q5T686 147 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 SLC25A24Q6NUK1 477 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 Q6ZR03 302 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 Q6ZRM9 215 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 OR1L1Q8NH94 360 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 PSMG3Q9BT73 122 aaPredicted RBP12.48□□□□□ -0.41
NUP54-217ENST00000514987 SLC25A15Q9Y619 301 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 CACNA1GO43497 2377 aa12.48□□□□□ -0.41
NUP54-217ENST00000514987 WNT9BO14905 357 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 FOLR2P14207 255 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 NFYBP25208 207 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 PPP1CCP36873 323 aaKnown RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 CFHR2P36980 270 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 GABRA2P47869 451 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 AESQ08117 197 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 KRBOX4Q5JUW0 171 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 ZNF826PQ6ZT77 177 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 FGFRL1Q8N441 504 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 PPP1R35Q8TAP8 253 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 COQ2Q96H96 371 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 OPN3Q9H1Y3 402 aaPredicted RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 WASF3Q9UPY6 502 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 PTPRBP23467 1997 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 SPINT2O43291 252 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 WISP2O76076 250 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 SCAF4O95104 1147 aaKnown RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 NXPH3O95157 252 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 PTBP3O95758 552 aaKnown RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 CRYABP02511 175 aaKnown RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 ADH4P08319 380 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 CEBPDP49716 269 aaPredicted RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 HTD2P86397 168 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 COL10A1Q03692 680 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 EIF4EBP1Q13541 118 aaPredicted RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 TIMM23BQ5SRD1 257 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 PRAMEF6Q5VXH4 476 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 SP5Q6BEB4 398 aaPredicted RBP12.47□□□□□ -0.41
NUP54-217ENST00000514987 SPSB3Q6PJ21 355 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 ZNF66Q6ZN08 573 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 ZNF295-AS1Q8N0V1 137 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 OR2D2Q9H210 308 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 FBXO7Q9Y3I1 522 aa12.47□□□□□ -0.41
NUP54-217ENST00000514987 IGHV3-64DA0A0J9YX35 117 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 C7orf77A4D0Y5 90 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 GZMHP20718 246 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 SERF2P84101 59 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 SOHLH1Q5JUK2 328 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 Q6ZS92 163 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 THNSL2Q86YJ6 484 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 EDARADDQ8WWZ3 215 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 HSD17B10Q99714 261 aaKnown RBP12.46□□□□□ -0.42
NUP54-217ENST00000514987 EGLN1Q9GZT9 426 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 MSL2Q9HCI7 577 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 RPS10P5Q9NQ39 176 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.46□□□□□ -0.42
NUP54-217ENST00000514987 UFSP2Q9NUQ7 469 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 HSPB7Q9UBY9 170 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 PRELID1Q9Y255 219 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 FAM186AA6NE01 2351 aa12.46□□□□□ -0.42
NUP54-217ENST00000514987 COLCA2A8K830 154 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 LY86O95711 162 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 HSPB1P04792 205 aaKnown RBP12.45□□□□□ -0.42
NUP54-217ENST00000514987 PRDX2P32119 198 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 UBE2KP61086 200 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 TMEM267Q0VDI3 215 aaPredicted RBP12.45□□□□□ -0.42
NUP54-217ENST00000514987 ATP6V1FQ16864 119 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 RNF212Q495C1 297 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 AWAT1Q58HT5 328 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 ZNF506Q5JVG8 444 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 C1orf185Q5T7R7 199 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 ZNF525Q8N782 197 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 OR52L2PQ8NGH6 319 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 UBALD1Q8TB05 177 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 CD300LFQ8TDQ1 290 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 RXFP4Q8TDU9 374 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 LRRC29Q8WV35 223 aa12.45□□□□□ -0.42
NUP54-217ENST00000514987 PINX1Q96BK5 328 aaKnown RBP12.45□□□□□ -0.42
NUP54-217ENST00000514987 SRRM5B3KS81 715 aa12.44□□□□□ -0.42
NUP54-217ENST00000514987 H3BP45 60 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms