RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PLSCR4Q9NRQ2 329 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 AK3Q9UIJ7 227 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 MSTNO14793 375 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 CECR9P0C854 216 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 FAM157CP0CG43 387 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 C1orf87Q8N0U7 546 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 ARL6IP6Q8N6S5 226 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 LINC00470Q9BZP3 86 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 FUT9Q9Y231 359 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 WSB1Q9Y6I7 421 aa7.42□□□□□ -1.22
LIMCH1-209ENST00000509277 OR6C6A6NF89 314 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 OR4C45A6NMZ5 311 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 MARCH11A6NNE9 402 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 GPR137BO60478 399 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 GABRR1P24046 479 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 OR3A1P47881 315 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF92Q03936 586 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 RELQ04864 619 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF345Q14585 488 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 HERPUD1Q15011 391 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 MPV17LQ2QL34 196 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ANGPTL5Q86XS5 388 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 OR56B2PQ8NGI1 322 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 DIRC2Q96SL1 478 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 TMEM212A6NML5 194 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF850A8MQ14 1090 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 OGG1O15527 345 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 TIMM8AO60220 97 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 PTBP3O95758 552 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ZBTB25P24278 435 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 CHRNB4P30926 498 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 RPS16P62249 146 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ANKRD55Q3KP44 614 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 PLCXD3Q63HM9 321 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 HIST3H2BBQ8N257 126 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ZCCHC24Q8N2G6 241 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 TXN2Q99757 166 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 OBP2BQ9NPH6 170 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 ETV7Q9Y603 341 aa7.41□□□□□ -1.22
LIMCH1-209ENST00000509277 CEBPZOSA8MTT3 80 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 RAB27BO00194 218 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 SYNGR3O43761 229 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 RPLP1P05386 114 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 TMEM11P17152 192 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 FUT3P21217 361 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 CEACAM8P31997 349 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 FBXW12Q6X9E4 464 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF709Q8N972 641 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 ADAT3Q96EY9 351 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 NDUFAF3Q9BU61 184 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 WNK2Q9Y3S1 2297 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 SPINK4O60575 86 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 GRPP07492 148 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 GCH1P30793 250 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 ELLP55199 621 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 ADORA2A-AS1P86434 159 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 P2RY6Q15077 328 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 AADACL3Q5VUY0 350 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 CATSPERDQ86XM0 798 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 SLC25A40Q8TBP6 338 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 GPX8Q8TED1 209 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 NEUROG1Q92886 237 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 BTF3L4Q96K17 158 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 TBX15Q96SF7 602 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 PNRC2Q9NPJ4 139 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 SLC17A5Q9NRA2 495 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 CYTL1Q9NRR1 136 aa7.4□□□□□ -1.22
LIMCH1-209ENST00000509277 C20orf202A1L168 122 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 ANGPTL7O43827 346 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 CYB5R3P00387 301 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 GALP22466 123 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 CA6P23280 308 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 SGPP2Q8IWX5 399 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 DYRK2Q92630 601 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 G6PC2Q9NQR9 355 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 FAM206AQ9NX38 181 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 HECTD1Q9ULT8 2610 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 TACC2O95359 2948 aa7.4□□□□□ -1.23
LIMCH1-209ENST00000509277 FAM24AA6NFZ4 105 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 FGF16O43320 207 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 JTBO76095 146 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 FCGR3AP08637 254 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 SLC25A4P12235 298 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 PPP1CBP62140 327 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 PRSS54Q6PEW0 395 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 HEPN1Q6WQI6 88 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 CALHM1Q8IU99 346 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF843Q8N446 348 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 MRPL24Q96A35 216 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 HIST1H2AAQ96QV6 131 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 NEU1Q99519 415 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 SAMD10Q9BYL1 202 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 PPP5D1E7EU14 171 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 DVL1O14640 695 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 DUS4LO95620 317 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 CST4P01036 141 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 CGAP01215 116 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 CSTBP04080 98 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM225BP0DP42 221 aa7.39□□□□□ -1.23
LIMCH1-209ENST00000509277 IRF2P14316 349 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms