RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MMDQ15546 238 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 HMGN3Q15651 99 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 DEFB136Q30KP8 78 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 RBM48Q5RL73 367 aaKnown RBP12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 C1orf100Q5SVJ3 147 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 FAM27D1Q5T7N8 215 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 C5orf24Q7Z6I8 188 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 GALMQ96C23 342 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 NABP2Q9BQ15 211 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 SULT4A1Q9BR01 284 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 CHCHD6Q9BRQ6 235 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 MRPL20Q9BYC9 149 aaKnown RBP12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 VCXQ9H320 206 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 SLC2A2P11168 524 aaPredicted RBP12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 MYF6P23409 242 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 PSMB8P28062 276 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 ACTBP60709 375 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 RPS27AP62979 156 aaKnown RBP12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 DGCR2P98153 550 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 OR10K2Q6IF99 312 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 C11orf87Q6NUJ2 197 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 ZNF833PQ6ZTB9 187 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 OR5M8Q8NGP6 311 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 KCNG3Q8TAE7 436 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 C4orf3Q8WVX3 66 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 KCTD7Q96MP8 289 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 B9D2Q9BPU9 175 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 TMED9Q9BVK6 235 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 TMEM59Q9BXS4 323 aa12.96□□□□□ -0.33
CCDC28B-204ENST00000469003 RAMP3O60896 148 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 CD37P11049 281 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 CD69Q07108 199 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 SPHARQ15513 63 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 C6orf201Q7Z4U5 140 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 MYOZ3Q8TDC0 251 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 ZNF251Q9BRH9 671 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 FAAP24Q9BTP7 215 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 TM2D1Q9BX74 207 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 ABRACLQ9P1F3 81 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 LSM2Q9Y333 95 aaKnown RBP12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 COL7A1Q02388 2944 aa12.95□□□□□ -0.34
CCDC28B-204ENST00000469003 DNAH9Q9NYC9 4486 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 SAA2-SAA4A0A096LPE2 208 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 PTGES3LE9PB15 166 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 NBR2O15453 112 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 HLA-DRB1P01911 266 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 SAA2P0DJI9 122 aaPredicted RBP12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 SRMP19623 302 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 HTR2CP28335 458 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 OR3A3P47888 321 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 UNC119Q13432 240 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 HSD17B12Q53GQ0 312 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 C9orf66Q5T8R8 295 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 FAM71F2Q6NXP2 309 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 ZNF880Q6PDB4 577 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 CEACAM19Q7Z692 300 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 SVOPQ8N4V2 548 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 OR2AK2Q8NG84 335 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 RITA1Q96K30 269 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 IFI27L2Q9H2X8 130 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 OR51J1Q9H342 316 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 STEAP1Q9UHE8 339 aa12.94□□□□□ -0.34
CCDC28B-204ENST00000469003 TMEM14DPA8MWL7 114 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 SLC22A1O15245 554 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 NAPSAO96009 420 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 UCHL1P09936 223 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 CNTFRP26992 372 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 PPIFP30405 207 aaKnown RBP12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 LUMP51884 338 aaPredicted RBP12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 QRFPP83859 136 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 FHL3Q13643 280 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 MED22Q15528 200 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 NPBQ8NG41 125 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 IL1F10Q8WWZ1 152 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 NICN1Q9BSH3 213 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 ANKRD60Q9BZ19 345 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 KCNK15Q9H427 330 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 SCN3BQ9NY72 215 aa12.93□□□□□ -0.34
CCDC28B-204ENST00000469003 IGHV7-81A0A0B4J1V7 117 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 G3V318 75 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 ATP6V0E1O15342 81 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 NDUFA3O95167 84 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 BPNT1O95861 308 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 BLVRBP30043 206 aaPredicted RBP12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 IRF3Q14653 427 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 C5orf64Q2M2E5 130 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 TMEM65Q6PI78 240 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 MOB1BQ7L9L4 216 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 OR6M1Q8NGM8 313 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 UBE2E2Q96LR5 201 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 CHMP1AQ9HD42 196 aaPredicted RBP12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 PARP11Q9NR21 331 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 PLEKHJ1Q9NW61 149 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 PIPOXQ9P0Z9 390 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 WSB1Q9Y6I7 421 aa12.92□□□□□ -0.34
CCDC28B-204ENST00000469003 A0A0A6YYD4 124 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 TRBV6-6A0A0A6YYG2 114 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 SEC14L6B5MCN3 397 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 RAB29O14966 203 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 ST8SIA5O15466 376 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms