RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	DPM3	Q9P2X0	92 aa		10.68	□□□□□ -0.7
SF1-206	ENST00000413725	TRBV6-7	A0A0A0MS04	114 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	IGKV1-6	A0A0C4DH72	117 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725		A0A1W2PPE3	182 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	BUB1B-PAK6	H3BSN5	160 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	GABARAP	H6UMI1	98 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ITGB1BP1	O14713	200 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	RCVRN	P35243	200 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	RAB7A	P51149	207 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ARHGDIB	P52566	201 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	RIPPLY3	P57055	190 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	TAS2R46	P59540	309 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ACTB	P60709	375 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ACTG1	P63261	375 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	IGSF11	Q5DX21	431 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	RNASE12	Q5GAN4	147 aa	Known RBP	10.67	□□□□□ -0.7
SF1-206	ENST00000413725	FAM53A	Q6NSI3	398 aa	Predicted RBP	10.67	□□□□□ -0.7
SF1-206	ENST00000413725	SLC25A48	Q6ZT89	311 aa	Known RBP	10.67	□□□□□ -0.7
SF1-206	ENST00000413725	SIGLECL1	Q8N7X8	197 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ZNF439	Q8NDP4	499 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	OR6Q1	Q8NGQ2	317 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	RPE	Q96AT9	228 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	JMJD8	Q96S16	334 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ABHD1	Q96SE0	405 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	NECAP2	Q9NVZ3	263 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	OR1A1	Q9P1Q5	309 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	ANAPC10	Q9UM13	185 aa		10.67	□□□□□ -0.7
SF1-206	ENST00000413725	SOX21	Q9Y651	276 aa	Predicted RBP	10.67	□□□□□ -0.7
SF1-206	ENST00000413725	MDFIC2	A0A1B0GVS7	189 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	OOSP1	A8MZH6	123 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	CTDSPL	O15194	276 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	SLC31A2	O15432	143 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	RBBP9	O75884	186 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	FCER2	P06734	321 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	NAT1	P18440	290 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	OR3A3	P47888	321 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	SSX2	Q16385	188 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	TUSC1	Q2TAM9	212 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	CT45A1	Q5HYN5	189 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	TPTE2P1	Q5T6R2	138 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	CCDC144NL	Q6NUI1	221 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	OR5AP2	Q8NGF4	316 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	OR52I2	Q8NH67	350 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	CT45A3	Q8NHU0	189 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	C17orf50	Q8WW18	174 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	SNAPC3	Q92966	411 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	TOMM40L	Q969M1	308 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	ZNF48	Q96MX3	618 aa	Predicted RBP	10.66	□□□□□ -0.7
SF1-206	ENST00000413725	TOLLIP	Q9H0E2	274 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	PRDM13	Q9H4Q3	707 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	RDH8	Q9NYR8	311 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	PTTG2	Q9NZH5	202 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	ZNRD1	Q9P1U0	126 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725	HILPDA	Q9Y5L2	63 aa		10.66	□□□□□ -0.7
SF1-206	ENST00000413725		A0A0A6YYJ9	748 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	BTBD17	A6NE02	478 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	TCF21	O43680	179 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	PTBP1	P26599	531 aa	Known RBP eCLIP	10.65	□□□□□ -0.7
SF1-206	ENST00000413725	ZNF134	P52741	427 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	DGCR2	P98153	550 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	SSBP1	Q04837	148 aa	Known RBP	10.65	□□□□□ -0.7
SF1-206	ENST00000413725	CDK10	Q15131	360 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	LDLRAD2	Q5SZI1	272 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725		Q6YL49	198 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	CCDC190	Q86UF4	302 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	LDLRAD3	Q86YD5	345 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	H1FOO	Q8IZA3	346 aa	Predicted RBP	10.65	□□□□□ -0.7
SF1-206	ENST00000413725	LYG1	Q8N1E2	194 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	OR5H2	Q8NGV7	314 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	FAM216A	Q8WUB2	273 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	SMIM4	Q8WVI0	70 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	AJUBA	Q96IF1	538 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	SOST	Q9BQB4	213 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	MEGF9	Q9H1U4	602 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	GHITM	Q9H3K2	345 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	MTFP1	Q9UDX5	166 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	RBM7	Q9Y580	266 aa	Known RBP	10.65	□□□□□ -0.7
SF1-206	ENST00000413725	ZFHX3	Q15911	3703 aa		10.65	□□□□□ -0.7
SF1-206	ENST00000413725	LY6L	H3BQJ8	138 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	HSD17B6	O14756	317 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	ST8SIA5	O15466	376 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	OR5H8	P0DN80	308 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	ETV6	P41212	452 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	ZNF137P	P52743	207 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	HILS1	P60008	231 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	BAMBI	Q13145	260 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	AANAT	Q16613	207 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	LRRC75B	Q2VPJ9	315 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	ACTBL2	Q562R1	376 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	PYDC2	Q56P42	97 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	OR8H3	Q8N146	312 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	SSMEM1	Q8WWF3	244 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	SSX3	Q99909	188 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	PARP12	Q9H0J9	701 aa	Known RBP	10.64	□□□□□ -0.71
SF1-206	ENST00000413725	C11orf54	Q9H0W9	315 aa	Predicted RBP	10.64	□□□□□ -0.71
SF1-206	ENST00000413725	DPAGT1	Q9H3H5	408 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	ABCB10	Q9NRK6	738 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	EHF	Q9NZC4	300 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	PIPOX	Q9P0Z9	390 aa		10.64	□□□□□ -0.71
SF1-206	ENST00000413725	KLK11	Q9UBX7	282 aa		10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms