RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SS18L1O75177 396 aaPredicted RBP17.5■□□□□ 0.39
CLK3-202ENST00000395066 CNOT4O95628 575 aaKnown RBP17.5■□□□□ 0.39
CLK3-202ENST00000395066 CYB5R3P00387 301 aaPredicted RBP17.5■□□□□ 0.39
CLK3-202ENST00000395066 IFNA5P01569 189 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 IGLV2-14P01704 120 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 SSTP61278 116 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 ABHD17BQ5VST6 288 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 SSX7Q7RTT5 188 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 TMEM251Q8N6I4 163 aa17.5■□□□□ 0.39
CLK3-202ENST00000395066 CISD1Q9NZ45 108 aaKnown RBP17.5■□□□□ 0.39
CLK3-202ENST00000395066 A0A1B0GU03 582 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 ANKRD30BLA7E2S9 258 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 TGOLN2O43493 480 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 LCN15Q6UWW0 184 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 C9orf172C9J069 976 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 HOXA6P31267 233 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 PKIAP61925 76 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 SRSF7Q16629 238 aaKnown RBP eCLIP17.49■□□□□ 0.39
CLK3-202ENST00000395066 ZNF665Q9H7R5 613 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 KCNS2Q9ULS6 477 aa17.49■□□□□ 0.39
CLK3-202ENST00000395066 A0A1W2PNU3 283 aaPredicted RBP17.48■□□□□ 0.39
CLK3-202ENST00000395066 BCL2P10415 239 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 PLGLB1Q02325 96 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 FAM53AQ6NSI3 398 aaPredicted RBP17.48■□□□□ 0.39
CLK3-202ENST00000395066 POM121Q96HA1 1249 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 RPRMQ9NS64 109 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 RBM7Q9Y580 266 aaKnown RBP17.48■□□□□ 0.39
CLK3-202ENST00000395066 MT-CO3P00414 261 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 CTXN2P0C2S0 81 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 DDTP30046 118 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 PLP2Q04941 152 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 ZNF787Q6DD87 383 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 SSX9Q7RTT3 188 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 IL22RA2Q969J5 263 aa17.48■□□□□ 0.39
CLK3-202ENST00000395066 RCC1LQ96I51 464 aaKnown RBP17.48■□□□□ 0.39
CLK3-202ENST00000395066 PACRGQ96M98 296 aaPredicted RBP17.48■□□□□ 0.39
CLK3-202ENST00000395066 ARHGAP21Q5T5U3 1957 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 COL27A1Q8IZC6 1860 aaPredicted RBP17.47■□□□□ 0.39
CLK3-202ENST00000395066 DEGS1O15121 323 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 WDR1O75083 606 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 IGKV1-5P01602 117 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 PGA5P0DJD9 388 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 PEAR1Q5VY43 1037 aaPredicted RBP17.47■□□□□ 0.39
CLK3-202ENST00000395066 REC114Q7Z4M0 266 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 OR10V1Q8NGI7 309 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 GTF3AQ92664 365 aaKnown RBP17.47■□□□□ 0.39
CLK3-202ENST00000395066 CDX2Q99626 313 aaPredicted RBP17.47■□□□□ 0.39
CLK3-202ENST00000395066 TSTD3H0UI37 97 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 PHOX2AO14813 284 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 GNG3P63215 75 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 WDR86Q86TI4 376 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 HAPLN4Q86UW8 402 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 MEGF10Q96KG7 1140 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 PRO1933Q9H354 126 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 B4GALT7Q9UBV7 327 aa17.47■□□□□ 0.39
CLK3-202ENST00000395066 PRR14LQ5THK1 2151 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 A0A1B0GV90 55 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 CELA3BP08861 270 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 ERVS71-1P61550 626 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 TESK1Q15569 626 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 ZNF726P1Q15940 193 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 SNX22Q96L94 193 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 HIST1H2BLQ99880 126 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 SDF2L1Q9HCN8 221 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 APLNRP35414 380 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 CEBPDP49716 269 aaPredicted RBP17.46■□□□□ 0.39
CLK3-202ENST00000395066 ZNF573Q86YE8 665 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 UBALD2Q8IYN6 164 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 CABLES2Q9BTV7 478 aa17.46■□□□□ 0.39
CLK3-202ENST00000395066 CACNA1DQ01668 2161 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 KMT2EQ8IZD2 1858 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 TRBV24-1A0A075B6N3 115 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 SMCO3A2RU48 225 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 IL18BPO95998 194 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 UNQ6494/PRO21346Q6UXR6 183 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 MDP1Q86V88 176 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 SCGB1C1Q8TD33 95 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 CA5BP1Q8WTZ4 195 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 SSX3Q99909 188 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 PRO3102Q9H379 93 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 A0A087X0M5 115 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 A0A1B0GX30 115 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 IFNA10P01566 189 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 OPN1MWP04001 364 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 OPN1MW2P0DN77 364 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 OPN1MW3P0DN78 364 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 ARR3P36575 388 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 CLN3Q13286 438 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 ALKBH6Q3KRA9 238 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 Q6P435 159 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 MCEMP1Q8IX19 187 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 OR51I2Q9H344 312 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 PSENENQ9NZ42 101 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 PITPNC1Q9UKF7 332 aa17.45■□□□□ 0.38
CLK3-202ENST00000395066 COX5BP10606 129 aa17.44■□□□□ 0.38
CLK3-202ENST00000395066 RNPS1Q15287 305 aaKnown RBP17.44■□□□□ 0.38
CLK3-202ENST00000395066 ZNF880Q6PDB4 577 aa17.44■□□□□ 0.38
CLK3-202ENST00000395066 RAB40CQ96S21 281 aa17.44■□□□□ 0.38
CLK3-202ENST00000395066 TRAPPC2LQ9UL33 140 aa17.44■□□□□ 0.38
CLK3-202ENST00000395066 DOCK11Q5JSL3 2073 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms