RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RPL12P30050 165 aaKnown RBP15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 FXYD4P59646 89 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 GPR157Q5UAW9 335 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 C20orf204Q6ZNR8 217 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 ARL11Q969Q4 196 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 ABHD14BQ96IU4 210 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 LURAP1Q96LR2 239 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM106BQ9NUM4 274 aa15.21■□□□□ 0.02
CCDC88C-203ENST00000389856 PPIAL4EA0A075B759 164 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 MSGN1A6NI15 193 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 PPIAL4DF5H284 164 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM178BH3BS89 294 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 PPIAL4FP0DN26 164 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 AESQ08117 197 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 HFEQ30201 348 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 IL34Q6ZMJ4 242 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 LDLRAD3Q86YD5 345 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 GALMQ96C23 342 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 MSI2Q96DH6 328 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 SPIN2AQ99865 258 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 SPIN2BQ9BPZ2 258 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 TAF9BQ9HBM6 251 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 ZC4H2Q9NQZ6 224 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 PPIAL4AQ9Y536 164 aa15.2■□□□□ 0.02
CCDC88C-203ENST00000389856 IGSF10Q6WRI0 2623 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 IGHV1-69-2A0A0G2JMI3 117 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 MPPED1O15442 326 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 SPINT2O43291 252 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 TUSC2O75896 110 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 CDS2O95674 445 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 GZMHP20718 246 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 IL2RGP31785 369 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 IL1F10Q8WWZ1 152 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 NINJ1Q92982 152 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 OR6C3Q9NZP0 311 aa15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 TMA7Q9Y2S6 64 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-203ENST00000389856 ICE1Q9Y2F5 2266 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 GPR31O00270 319 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 NDUFA2O43678 99 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 H1FOOQ8IZA3 346 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 GLYATL2Q8WU03 294 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 CCL17Q92583 94 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 COQ2Q96H96 371 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 METRNQ9UJH8 293 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 OR2W1Q9Y3N9 320 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 ZFYVE26Q68DK2 2539 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 TANC2Q9HCD6 1990 aa15.18■□□□□ 0.02
CCDC88C-203ENST00000389856 C3orf85A0A1B0GTC6 90 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 ODAMA1E959 279 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 P2RY1P47900 373 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 BLOC1S1P78537 153 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 EDDM3AQ14507 147 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 HERPUD1Q15011 391 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 PHLDA2Q53GA4 152 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 ZNF788Q6ZQV5 615 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 CMTM1Q8IZ96 169 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 ZCCHC24Q8N2G6 241 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 ZNF843Q8N446 348 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 DEFB108BQ8NET1 73 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 FAM216AQ8WUB2 273 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 NEU4Q8WWR8 484 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 IL22RA2Q969J5 263 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM56Q96MV1 263 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM222Q9H0R3 208 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 MMP26Q9NRE1 261 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 LPAR3Q9UBY5 353 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM56-RWDD3S4R434 201 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 SIGLEC5O15389 551 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 ST8SIA3O43173 380 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 GPR137BO60478 399 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 WNT2P09544 360 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 FAM157CP0CG43 387 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 IGFBP2P18065 325 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 TMED6Q8WW62 240 aa15.17■□□□□ 0.02
CCDC88C-203ENST00000389856 CACNA1DQ01668 2161 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 IGKV1-6A0A0C4DH72 117 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 PHF1O43189 567 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 FSTL3O95633 263 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 MBPP02686 304 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 GLIPR1P48060 266 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 TAGLNQ01995 201 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM30BQ3MIR4 351 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 TMEM268Q5VZI3 342 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 PRR18Q8N4B5 295 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 UBAC2Q8NBM4 344 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 OR1S2Q8NGQ3 325 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 C14orf79Q96F83 325 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 SMIM8Q96KF7 97 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 GAFA1Q96PS6 74 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 LSM5Q9Y4Y9 91 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 KLF2Q9Y5W3 355 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 NBEAQ8NFP9 2946 aa15.16■□□□□ 0.02
CCDC88C-203ENST00000389856 BORCS7-ASMTA0A0B4J1R7 106 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 C12orf77C9JDV5 145 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 KCNAB3O43448 404 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 SCO1O75880 301 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 GYPAP02724 150 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 GNRHRP30968 328 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 EDDM3BP56851 147 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 MRPS11P82912 194 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms