RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 XRCC3O43542 346 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 F12P00748 615 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 CLDN18P56856 261 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 TVP23CQ96ET8 276 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 RNF2Q99496 336 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 NEU1Q99519 415 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 C11orf54Q9H0W9 315 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 C20orf141Q9NUB4 165 aa7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 RBFOX1Q9NWB1 397 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 EXOGQ9Y2C4 368 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-202ENST00000381753 GEMIN2O14893 280 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 NPFFO15130 113 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 MT-ND4LP03901 98 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 COX5BP10606 129 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 G6PCP35575 357 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 HLA-DRB3P79483 266 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 TCEAL7Q9BRU2 100 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 RANGRFQ9HD47 186 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 IGHV3-66A0A0C4DH42 116 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 H7BYZ3 331 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 OR2H2O95918 312 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 RPL8P62917 257 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 MEF2CQ06413 473 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 SPANXN1Q5VSR9 72 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 RFLNBQ8N5W9 214 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 WDFY2Q96P53 400 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 MRPS18CQ9Y3D5 142 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 CSAG2Q9Y5P2 127 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 KPTNQ9Y664 436 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 HBZP02008 142 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 RNF224P0DH78 156 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 CDC34P49427 236 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 SULT1A2P50226 295 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 TMEM30BQ3MIR4 351 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 WDR38Q5JTN6 314 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 Q6ZN92 141 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ZNRF1Q8ND25 227 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ZNF486Q96H40 463 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 SIGLEC7Q9Y286 467 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 A0A1B0GVG6 124 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 H3BP45 60 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 OIP5O43482 229 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 KLF7O75840 302 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 AGAP20933 346 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ZAR1Q86SH2 424 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ZDHHC22Q8N966 263 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 OR10Z1Q8NGY1 313 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 TMEM167AQ8TBQ9 72 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 FBLIM1Q8WUP2 373 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 YIPF6Q96EC8 236 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 SLC45A2Q9UMX9 530 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 CBY3A6NI87 242 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 CEACAM18A8MTB9 384 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 G0S2P27469 103 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 H3F3AP84243 136 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 C10orf113Q5VZT2 155 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 C19orf35Q6ZS72 473 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 PIP4P2Q8N4L2 257 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 KIR3DL3Q8N743 410 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 HGDQ93099 445 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 TMPRSS13Q9BYE2 586 aa7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ZNF230Q9UIE0 474 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-202ENST00000381753 ISLRO14498 428 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 LY6HO94772 140 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 PI3P19957 117 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 ERVS71-1P61550 626 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 PDZK1IP1Q13113 114 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 ESPL1Q14674 2120 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 HIST2H3AQ71DI3 136 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 C1QL2Q7Z5L3 287 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 DMRTC2Q8IXT2 367 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 POC1AQ8NBT0 407 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 ARHGAP5-AS1Q96IT6 56 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 TEX37Q96LM6 180 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 MIEN1Q9BRT3 115 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 TRAV9-2A0A087WT02 112 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 MESTQ5EB52 335 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 APCDD1LQ8NCL9 501 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 KCNK7Q9Y2U2 307 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 LTBP1Q14766 1721 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 HRH1P35367 487 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 DRAM1Q8N682 238 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 C5orf17Q8NAS9 161 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 OR2G3Q8NGZ4 309 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 PRSS27Q9BQR3 290 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 MMP28Q9H239 520 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 FBXL15Q9H469 300 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 DEPPQ9NTK1 212 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 FCGR2BP31994 310 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 IGFL3Q6UXB1 125 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 ZFAND2BQ8WV99 257 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 TMEM101Q96IK0 257 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 NRIP2Q9BQI9 281 aa7.84□□□□□ -1.15
LIMCH1-202ENST00000381753 IGHV1-18A0A0C4DH31 117 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 OR11H12B2RN74 326 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 KRBOX1C9JBD0 128 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 GPR183P32249 361 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 GDNFP39905 211 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 UBE2L3P68036 154 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 HIST2H2BCQ6DN03 193 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms