RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RPL36ALQ969Q0 106 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 C7orf34Q96L11 122 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 HYLS1Q96M11 299 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 OR2M2Q96R28 347 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RNF5Q99942 180 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 WNT10AQ9GZT5 417 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 NMNAT1Q9HAN9 279 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MMP24Q9Y5R2 645 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 TMEM82A0PJX8 343 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ZFPL1O95159 310 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ZNF205O95201 554 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SNAPINO95295 136 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 LY6G6CO95867 125 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CD1AP06126 327 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RD3LP0DJH9 198 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SPANXN5Q5MJ07 72 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RHOUQ7L0Q8 258 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 HOGA1Q86XE5 327 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SPNS2Q8IVW8 549 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 DRAM1Q8N682 238 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CELF2-AS1Q8N7Q2 184 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 LINC00482Q8N8I6 264 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RTN4IP1Q8WWV3 396 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 LSM10Q969L4 123 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 KIR2DL4Q99706 377 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 C2orf88Q9BSF0 95 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 TMEM38AQ9H6F2 299 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 C21orf62Q9NYP8 219 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SOD1P00441 154 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 GP9P14770 177 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 HOXD3P31249 432 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 TAS2R60P59551 318 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RAE1P78406 368 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MORN3Q6PF18 240 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 TOMM20LQ6UXN7 152 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RFLNAQ6ZTI6 216 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 OR1B1Q8NGR6 318 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 OR2G3Q8NGZ4 309 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 DMRTB1Q96MA1 342 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 HSF4Q9ULV5 492 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 TSC22D4Q9Y3Q8 395 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 PCM1Q15154 2024 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 MTORP42345 2549 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 F8VVB4 439 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 F8VWA3 439 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 LDLRAD4O15165 306 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 NBR2O15453 112 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 KBTBD11O94819 623 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PI3P19957 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 GATA2P23769 480 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 SPCS3P61009 180 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 LOXL1Q08397 574 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 TDRG1Q3Y452 100 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 KHDC1Q4VXA5 237 aaKnown RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 KLF14Q8TD94 323 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 TMEM190Q8WZ59 177 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 OR2D2Q9H210 308 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 MED20Q9H944 212 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 FAM60AQ9NP50 221 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CALYQ9NYX4 217 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CD300AQ9UGN4 299 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 JPT1Q9UK76 154 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 VPREB3Q9UKI3 123 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ANKRD26Q9UPS8 1709 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGKV3D-11A0A0A0MRZ8 115 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGHV1-69DA0A0B4J2H0 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGKV3OR2-268A0A0C4DH90 116 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGSF23A1L1A6 192 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TBX19O60806 448 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGHV1-69P01742 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGKV3-11P04433 115 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IFI6P09912 130 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CSF2RBP32927 897 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CD81P60033 236 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 KLF9Q13886 244 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 RPS26P11Q5JNZ5 115 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 MEIG1Q5JSS6 88 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 DMRTA1Q5VZB9 504 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CNIH2Q6PI25 160 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CANT1Q8WVQ1 401 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 NRG4Q8WWG1 115 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CFHR4Q92496 578 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SAMD10Q9BYL1 202 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 DOK5Q9P104 306 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 DIMT1Q9UNQ2 313 aaKnown RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 LINC00312Q9Y6C7 94 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 MYOM1P52179 1685 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TRAV1-1A0A0B4J248 108 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 C11orf94C9JXX5 98 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 K7EPK0 472 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 BANF1O75531 89 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGKV1D-33P01593 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGKV1-33P01594 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ZNF708P17019 499 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PPIFP30405 207 aaKnown RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 LPAR6P43657 344 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CCR6P51684 374 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CLDN18P56856 261 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 FAM3AP98173 230 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 RIGQ13278 110 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms