RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 AMELYQ99218 206 aa12.89□□□□□ -0.35
CHD4-201ENST00000357008 NAT2P11245 290 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 ERGP11308 486 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 SFTPA2Q8IWL1 248 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 TRPM6Q9BX84 2022 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 RAB29O14966 203 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 HLA-DQA1P01909 254 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 OR4A47Q6IF82 309 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 PAPPA2Q9BXP8 1791 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 IGKV1-8A0A0C4DH67 115 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A10PA6NDY2 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A18PA6NE21 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A16PA6NEW6 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A20PA6NIJ5 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A8PA6NJQ4 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A7PA6NKC0 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A22PA8MWA6 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A12PA8MX19 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A5PA8MXJ8 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A23PA8MXZ1 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 CA2P00918 260 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A15PP0C7V4 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A13PP0C7W8 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A14PP0C7W9 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A24PP0C7X0 464 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 CDX1P47902 265 aaPredicted RBP12.88□□□□□ -0.35
CHD4-201ENST00000357008 TEX30Q5JUR7 227 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 SSX8Q7RTT4 187 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 TAF15Q92804 592 aaKnown RBP eCLIP12.88□□□□□ -0.35
CHD4-201ENST00000357008 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.88□□□□□ -0.35
CHD4-201ENST00000357008 H0YL77 283 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 PIN1P1O15428 100 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 HYPMO75409 117 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 AGFG2O95081 481 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 RBM14Q96PK6 669 aaKnown RBP12.88□□□□□ -0.35
CHD4-201ENST00000357008 HIGD1AQ9Y241 93 aa12.88□□□□□ -0.35
CHD4-201ENST00000357008 CCL4P13236 92 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 SPATA45Q537H7 98 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 C1orf53Q5VUE5 145 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 LAIR2Q6ISS4 152 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 ZNF488Q96MN9 340 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 HEXA-AS1Q9H8Q6 139 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A27PA6NNH2 459 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 OR2A4O95047 310 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 IBA57Q5T440 356 aaKnown RBP12.87□□□□□ -0.35
CHD4-201ENST00000357008 OR2A7Q96R45 310 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 YBX2Q9Y2T7 364 aaKnown RBP12.87□□□□□ -0.35
CHD4-201ENST00000357008 COL18A1P39060 1754 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 IGLV1-36A0A0B4J1U3 117 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 C21orf140B9A014 251 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 PSG4Q00888 419 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 CXorf66Q5JRM2 361 aaPredicted RBP12.87□□□□□ -0.35
CHD4-201ENST00000357008 C12orf54Q6X4T0 127 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 MDP1Q86V88 176 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 WDR31Q8NA23 367 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 UQCR10Q9UDW1 63 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 NUDT16L1Q9BRJ7 211 aaKnown RBP12.87□□□□□ -0.35
CHD4-201ENST00000357008 IFI6P09912 130 aa12.87□□□□□ -0.35
CHD4-201ENST00000357008 TGIF2-C20orf24A0A0A6YYL0 155 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 SIAH2O43255 324 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 NMUP48645 174 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 WNT2BQ93097 391 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 MARS2Q96GW9 593 aaKnown RBP12.86□□□□□ -0.35
CHD4-201ENST00000357008 KCNK17Q96T54 332 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 WFDC6Q9BQY6 131 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 OR2J1Q9GZK6 312 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 CISD1Q9NZ45 108 aaKnown RBP12.86□□□□□ -0.35
CHD4-201ENST00000357008 TREM2Q9NZC2 230 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 WIPI2Q9Y4P8 454 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 DMRT1Q9Y5R6 373 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 TMSB15BA0A087X1C1 80 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 A0A1W2PRD5 423 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 A0A1W2PRF3 423 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 A0A1W2PRM7 423 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 H3BVH4 76 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 CDK2AP1O14519 115 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 PRDX2P32119 198 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 RND3P61587 244 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 COL10A1Q03692 680 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 RBPMS2Q6ZRY4 209 aaKnown RBP12.86□□□□□ -0.35
CHD4-201ENST00000357008 PRNTQ86SH4 94 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 EIF3GO75821 320 aaKnown RBP eCLIP12.86□□□□□ -0.356e-9■■■■□ 22.8
CHD4-201ENST00000357008 SCTP09683 121 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 SLC35B1P78383 322 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 OR2I1PQ8NGU4 316 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 A0A0J9YW62 118 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 IGHV5-10-1A0A0J9YXX1 117 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 APCDD1LQ8NCL9 501 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 KCNE5Q9UJ90 142 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 GAGE10A6NGK3 116 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 TSPAN2O60636 221 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 C1orf174Q8IYL3 243 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 TMUB1Q9BVT8 246 aa12.86□□□□□ -0.35
CHD4-201ENST00000357008 FAM90A26D6RGX4 464 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 CLDN14O95500 239 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 MGPP08493 103 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 HOXD4P09016 255 aaPredicted RBP12.85□□□□□ -0.35
CHD4-201ENST00000357008 IL11P20809 199 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 SOSTQ9BQB4 213 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 GPR61Q9BZJ8 451 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms