RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VEGFCP49767 419 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 GABARAPL2P60520 117 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 HES5Q5TA89 166 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 SAMD5Q5TGI4 173 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 CD200R1LQ6Q8B3 271 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 Q8N9W7 124 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 SETD6Q8TBK2 473 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 YPEL2Q96QA6 119 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 ABHD14AQ9BUJ0 271 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 CHMP1AQ9HD42 196 aaPredicted RBP14.53□□□□□ -0.08
CLN3-202ENST00000355477 LRRC42Q9Y546 428 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 TSSC4Q9Y5U2 329 aaPredicted RBP14.53□□□□□ -0.08
CLN3-202ENST00000355477 PSMB11A5LHX3 300 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 SERPINE3A8MV23 424 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 LDLRAD4O15165 306 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 TXNL1O43396 289 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 DENRO43583 198 aaKnown RBP14.52□□□□□ -0.09
CLN3-202ENST00000355477 F2RL1P55085 397 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 OR10A3P58181 314 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 BEAN1Q3B7T3 259 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 LY6G6FQ5SQ64 297 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 OR4X2Q8NGF9 303 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 IL1F10Q8WWZ1 152 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 ARHGAP5-AS1Q96IT6 56 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 ABRACLQ9P1F3 81 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 HSF4Q9ULV5 492 aa14.52□□□□□ -0.09
CLN3-202ENST00000355477 DNAH3Q8TD57 4116 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 TRBV6-6A0A0A6YYG2 114 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 TRAV1-2A0A0B4J238 106 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 TMEM272A0A1B0GTI8 110 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 TRDV1A0A1B0GX56 115 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 OR3A3P47888 321 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 PSMD7P51665 324 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 OXLD1Q5BKU9 147 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 PLAC9Q5JTB6 97 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 SLC35E3Q7Z769 313 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 SPARTQ8N0X7 666 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 CHPT1Q8WUD6 406 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 S1PR3Q99500 378 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 PECRQ9BY49 303 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 STEAP1Q9UHE8 339 aa14.51□□□□□ -0.09
CLN3-202ENST00000355477 MRPS14O60783 128 aaKnown RBP14.5□□□□□ -0.09
CLN3-202ENST00000355477 RGS11O94810 467 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 GPR12P47775 334 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 LSAMPQ13449 338 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 UBE2UQ5VVX9 321 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 RITA1Q96K30 269 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 MRPL20Q9BYC9 149 aaKnown RBP14.5□□□□□ -0.09
CLN3-202ENST00000355477 PARP12Q9H0J9 701 aaKnown RBP14.5□□□□□ -0.09
CLN3-202ENST00000355477 ABCG5Q9H222 651 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 IFI27L2Q9H2X8 130 aa14.5□□□□□ -0.09
CLN3-202ENST00000355477 RIMS4Q9H426 269 aaPredicted RBP14.5□□□□□ -0.09
CLN3-202ENST00000355477 LIN7CQ9NUP9 197 aaKnown RBP14.5□□□□□ -0.09
CLN3-202ENST00000355477 SAA2-SAA4A0A096LPE2 208 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 SAA2P0DJI9 122 aaPredicted RBP14.49□□□□□ -0.09
CLN3-202ENST00000355477 KHDC1LQ5JSQ8 128 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 KPRPQ5T749 579 aaPredicted RBP14.49□□□□□ -0.09
CLN3-202ENST00000355477 C22orf42Q6IC83 251 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 ZNF833PQ6ZTB9 187 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 MOB1BQ7L9L4 216 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 STPG2Q8N412 459 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 FAM71E2Q8N5Q1 922 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 OR2AK2Q8NG84 335 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 NABP2Q9BQ15 211 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 Q9H521 79 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 RAB22AQ9UL26 194 aa14.49□□□□□ -0.09
CLN3-202ENST00000355477 A0A0B4J203 849 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 IFITM5A6NNB3 132 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 PDCD5O14737 125 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 ST8SIA5O15466 376 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 SCTP09683 121 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 PF4V1P10720 104 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 MOGAT2Q3SYC2 334 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 C18orf65Q6ZTR6 163 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 NR2C2APQ86WQ0 139 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 FOXRED2Q8IWF2 684 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 WFDC9Q8NEX5 89 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 OR8H1Q8NGG4 311 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 OR56B1Q8NGI3 324 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 RASL11BQ9BPW5 248 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 HSPB9Q9BQS6 159 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 ZNF251Q9BRH9 671 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 Q9N2K0 584 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 OR1A1Q9P1Q5 309 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 KCNK7Q9Y2U2 307 aa14.48□□□□□ -0.09
CLN3-202ENST00000355477 PRB2P02812 416 aaPredicted RBP14.47□□□□□ -0.09
CLN3-202ENST00000355477 RAB3BP20337 219 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 GALP22466 123 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 MYL9P24844 172 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 CNTFRP26992 372 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 PSMB9P28065 219 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 HLA-DRB3P79483 266 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 CMSS1Q9BQ75 279 aaKnown RBP14.47□□□□□ -0.09
CLN3-202ENST00000355477 YTHDF1Q9BYJ9 559 aaKnown RBP14.47□□□□□ -0.09
CLN3-202ENST00000355477 C12orf4Q9NQ89 552 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 SLC23A1Q9UHI7 598 aa14.47□□□□□ -0.09
CLN3-202ENST00000355477 IGKV1-6A0A0C4DH72 117 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 SMIM30A4D0T7 59 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 AP4M1O00189 453 aa14.46□□□□□ -0.09
CLN3-202ENST00000355477 CEACAM6P40199 344 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms