RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 TRBV5-5A0A0J9YX44 114 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 A0A1W2PP11 408 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 SPINT2O43291 252 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 HBZP02008 142 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 BDKRB2P30411 391 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 RAB9AP51151 201 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 GPR176Q14439 515 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 MORN2Q502X0 79 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 SYT6Q5T7P8 510 aaPredicted RBP12.72□□□□□ -0.37
CLN3-255ENST00000637100 DDI2Q5TDH0 399 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 NPBQ8NG41 125 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 DCUN1D4Q92564 292 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 RITA1Q96K30 269 aa12.72□□□□□ -0.37
CLN3-255ENST00000637100 FAM90A7PA6NKC0 464 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 FAM90A23PA8MXZ1 464 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 G3V318 75 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 NDUFA3O95167 84 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 ATAD3CQ5T2N8 411 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 C6orf183Q5T699 404 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 TRAT1Q6PIZ9 186 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 CDH26Q8IXH8 852 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 STX19Q8N4C7 294 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 OR1L1Q8NH94 360 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 APH1BQ8WW43 257 aa12.71□□□□□ -0.37
CLN3-255ENST00000637100 RPL36Q9Y3U8 105 aaKnown RBP12.71□□□□□ -0.37
CLN3-255ENST00000637100 CSMD3Q7Z407 3707 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 MAGEA13PA6NCF6 341 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 MCRIP1C9JLW8 97 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 OVOL1O14753 267 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 ATP6V0E1O15342 81 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 RCC1P18754 421 aaPredicted RBP12.7□□□□□ -0.38
CLN3-255ENST00000637100 SERPINA2P20848 420 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 ACTBP60709 375 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 RPS11P62280 158 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLN3-255ENST00000637100 ADARB1P78563 741 aaKnown RBP12.7□□□□□ -0.38
CLN3-255ENST00000637100 HTD2P86397 168 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 MMDQ15546 238 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 C5orf64Q2M2E5 130 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 SLC22A6Q4U2R8 563 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 FAM27D1Q5T7N8 215 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 TMEM65Q6PI78 240 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 CBR4Q8N4T8 237 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 PYDC1Q8WXC3 89 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 DLX4Q92988 240 aaPredicted RBP12.7□□□□□ -0.38
CLN3-255ENST00000637100 RDH12Q96NR8 316 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 CITED4Q96RK1 184 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 NABP2Q9BQ15 211 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 GNG12Q9UBI6 72 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 WSB1Q9Y6I7 421 aa12.7□□□□□ -0.38
CLN3-255ENST00000637100 TRAV41A0A0B4J266 112 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 LCE6AA0A183 80 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 A8MZ25 164 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 SOX15O60248 233 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 FRMD6-AS1P0C7T7 363 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 FSTP19883 344 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 PPP3R1P63098 170 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 RIPK1Q13546 671 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 SIGIRRQ6IA17 410 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ACSM6Q6P461 480 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ZNF833PQ6ZTB9 187 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ZNF485Q8NCK3 441 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 OR4K15Q8NH41 348 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ORAI1Q96D31 301 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 SMIM19Q96E16 107 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 S100A13Q99584 98 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ZNF184Q99676 751 aaPredicted RBP12.69□□□□□ -0.38
CLN3-255ENST00000637100 TM2D3Q9BRN9 247 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ANKRD60Q9BZ19 345 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 TOLLIPQ9H0E2 274 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ISYNA1Q9NPH2 558 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 BABAM2Q9NXR7 383 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 ETAA1Q9NY74 926 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 TRAPPC2LQ9UL33 140 aa12.69□□□□□ -0.38
CLN3-255ENST00000637100 TRBV5-7A0A0A0MS05 114 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 LOC100130705A0A1B0GUX0 176 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 NBR2O15453 112 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 YPEL1O60688 119 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 WBP4O75554 376 aaKnown RBP12.68□□□□□ -0.38
CLN3-255ENST00000637100 SLC2A2P11168 524 aaPredicted RBP12.68□□□□□ -0.38
CLN3-255ENST00000637100 SPNP16150 400 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 CNTFRP26992 372 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 DCKP27707 260 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 ETV1P50549 477 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 DMKNQ6E0U4 476 aaPredicted RBP12.68□□□□□ -0.38
CLN3-255ENST00000637100 RAB12Q6IQ22 244 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 LIN54Q6MZP7 749 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 OR10V1Q8NGI7 309 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 NEK7Q8TDX7 302 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 YPEL2Q96QA6 119 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 SLC29A1Q99808 456 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 TAF9BQ9HBM6 251 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 JPT1Q9UK76 154 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 NUBP2Q9Y5Y2 271 aa12.68□□□□□ -0.38
CLN3-255ENST00000637100 TRAV8-7A0A075B6U6 113 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 LALBAP00709 142 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 EGR2P11161 476 aaPredicted RBP12.67□□□□□ -0.38
CLN3-255ENST00000637100 LYL1P12980 280 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 GP9P14770 177 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 FUT3P21217 361 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 MYF6P23409 242 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms