RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 SPACA5Q96QH8 159 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 GAL3ST1Q99999 423 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 ARPC5LQ9BPX5 153 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 MICU1Q9BPX6 476 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 CHST5Q9GZS9 411 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 FXYD6Q9H0Q3 95 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 WDR13Q9H1Z4 485 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 SMDT1Q9H4I9 107 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 PATZ1Q9HBE1 687 aaKnown RBP4.37□□□□□ -1.71
SHMT1-211ENST00000618902 RHOFQ9HBH0 211 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 C12orf4Q9NQ89 552 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 IFT46Q9NQC8 304 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 HIF1ANQ9NWT6 349 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 C1orf123Q9NWV4 160 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 TAS2R3Q9NYW6 316 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 RNF7Q9UBF6 113 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 KAAG1Q9UBP8 84 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 KCNK7Q9Y2U2 307 aa4.37□□□□□ -1.71
SHMT1-211ENST00000618902 IGKV1-12A0A0C4DH73 117 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR5B21A6NL26 309 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 A6NLC8 198 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SRRM5B3KS81 715 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 FAM157AC9JC47 383 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 FGF16O43320 207 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 TCF21O43680 179 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 TSPAN9O75954 239 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SNAPINO95295 136 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 IGKV1D-12P01611 117 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 HLA-AP01891 365 aaKnown RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SELLP14151 372 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 ZNF20P17024 532 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 ZFP36P26651 326 aaKnown RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SRP14P37108 136 aaKnown RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 GNG3P63215 75 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 QRFPP83859 136 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 MICBQ29980 383 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 CR1LQ2VPA4 569 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 RNASE12Q5GAN4 147 aaKnown RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 DCAF12L2Q5VW00 463 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 HAGHLQ6PII5 290 aaPredicted RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 C9orf139Q6ZV77 190 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 C1QL2Q7Z5L3 287 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 BAP18Q8IXM2 172 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 BOLLQ8N9W6 283 aaKnown RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 DEFB108BQ8NET1 73 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR5A2Q8NGI9 324 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR13C9Q8NGT0 318 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR10K1Q8NGX5 313 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR8S1Q8NH09 359 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 OR4K15Q8NH41 348 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 LRRC29Q8WV35 223 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 RAB3CQ96E17 227 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 NEIL1Q96FI4 390 aaPredicted RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 CYYR1Q96J86 154 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 HIST1H2AAQ96QV6 131 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 S100A13Q99584 98 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 RTL8AQ9BWD3 113 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SUCNR1Q9BXA5 334 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 CHST6Q9GZX3 395 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 CNTD2Q9H8S5 307 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 SEBOXQ9HB31 216 aaPredicted RBP4.36□□□□□ -1.71
SHMT1-211ENST00000618902 BEX1Q9HBH7 125 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 TAS2R4Q9NYW5 299 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 GPR132Q9UNW8 380 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 KCNIP3Q9Y2W7 256 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 PPIAL4AQ9Y536 164 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 KIAA2026Q5HYC2 2103 aa4.36□□□□□ -1.71
SHMT1-211ENST00000618902 KIR2DS1A0A191URI9 304 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 A0A1W2PPH5 198 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 FAM230AA0A1W2PPH8 454 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 KIAA1324LA8MWY0 1029 aaPredicted RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 CLDN34H7C241 214 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 J3QT63 122 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 LGALS8O00214 317 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 TOR1AO14656 332 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 SPRY1O43609 319 aaPredicted RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 JTBO76095 146 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 SFT2D2O95562 160 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 IFNA21P01568 189 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 GAPDHP04406 335 aaKnown RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 WNT2P09544 360 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 H2AFB1P0C5Y9 115 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 PGA5P0DJD9 388 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 VSIG8P0DPA2 414 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 HIST1H1DP16402 221 aaKnown RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 NPBWR2P48146 333 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 RAB5CP51148 216 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 EFNB2P52799 333 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 ERVK11-1P61568 191 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 FLI1Q01543 452 aaPredicted RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 SRSF7Q16629 238 aaKnown RBP eCLIP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 SCGB2B2Q4G0G5 96 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 OXLD1Q5BKU9 147 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 LY6G6FQ5SQ64 297 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 C10orf91Q5T1B1 145 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 TEX36Q5VZQ5 186 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 PRSS54Q6PEW0 395 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 ZNF841Q6ZN19 808 aa4.35□□□□□ -1.71
SHMT1-211ENST00000618902 Q71RC1 249 aaPredicted RBP4.35□□□□□ -1.71
SHMT1-211ENST00000618902 TRAPPC6BQ86SZ2 158 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms