RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PNKDQ8N490 385 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 RNF138Q8WVD3 245 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 EXTL1Q92935 676 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 IL22RA2Q969J5 263 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 GSKIPQ9P0R6 139 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 MRPS16Q9Y3D3 137 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 LRP12Q9Y561 859 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 B3GALT1Q9Y5Z6 326 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 PRSS37A4D1T9 235 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 FAM166BA8MTA8 275 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 K7ENP7 123 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 IFNL4K9M1U5 179 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 WDR1O75083 606 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 KBTBD11O94819 623 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 NUDT14O95848 222 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 SLC35E2P0CK97 266 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 GNB3P16520 340 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 YPEL3P61236 119 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 SERF2P84101 59 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 TLE3Q04726 772 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 CST9LP1Q5W188 147 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 WDR25Q64LD2 544 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 ZNF761Q86XN6 746 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 ZNF100Q8IYN0 542 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 CCDC71LQ8N9Z2 235 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 NUDT10Q8NFP7 164 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 GPR119Q8TDV5 335 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 PINX1Q96BK5 328 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 TMEM106BQ9NUM4 274 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 LSM5Q9Y4Y9 91 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 ZFHX2Q9C0A1 2572 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 TRAV30A0A087WSZ9 112 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 IGHV2-70DA0A0C4DH43 119 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 NPIPA7E9PJI5 369 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 J3QR06 171 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 AHSA1O95433 338 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 NPIPA8P0DM63 369 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 KLK2P20151 261 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 GRPRP30550 384 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 CHRNB4P30926 498 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 CEACAM3P40198 252 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ID1P41134 155 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ATP5IP56385 69 aaPredicted RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 TPPP2P59282 170 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RPL15P61313 204 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 RHOGP84095 191 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RPL18Q07020 188 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 OR8B8Q15620 311 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 NSDHLQ15738 373 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TPTE2P1Q5T6R2 138 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ZNF66Q6ZN08 573 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 C10orf35Q96D05 121 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SMIM12Q96EX1 92 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 OR6C1Q96RD1 312 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ABHD6Q9BV23 337 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ULBP3Q9BZM4 244 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SLC22A13Q9Y226 551 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TIMM9Q9Y5J7 89 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TNFRSF18Q9Y5U5 241 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SPENQ96T58 3664 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 SAA2-SAA4A0A096LPE2 208 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 A0A1B0GTH9 108 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 FBLL1A6NHQ2 334 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 TNFSF15O95150 251 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 BGLAPP02818 100 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 CTSBP07858 339 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 GABRA3P34903 492 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RPL29P47914 159 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 NPBWR2P48146 333 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TIRAPP58753 221 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RPL27P61353 136 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 CCL20P78556 96 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 FOXL1Q12952 345 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 OR5I1Q13606 314 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SRSF7Q16629 238 aaKnown RBP eCLIP4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM249Q2WGJ8 235 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 PLAC9Q5JTB6 97 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 CARD17Q5XLA6 110 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM144Q7Z5S9 345 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 C11orf42Q8N5U0 333 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 STXBP6Q8NFX7 210 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 OR5L1Q8NGL2 311 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 OR2Y1Q8NGV0 311 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RNF133Q8WVZ7 376 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ATP5SQ99766 215 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM59Q9BXS4 323 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SH3BGRL3Q9H299 93 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TXNIPQ9H3M7 391 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 MRPL22Q9NWU5 206 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 PLA2G3Q9NZ20 509 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 EHFQ9NZC4 300 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 B3GAT1Q9P2W7 334 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 UQCR10Q9UDW1 63 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ASPMQ8IZT6 3477 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 A0A0A6YYD4 124 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 A0A1B0GW15 77 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RNF212BA8MTL3 300 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM150CB9EJG8 249 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SOX15O60248 233 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SCRG1O75711 98 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms