RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 BRICD5Q6PL45 260 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 C12orf54Q6X4T0 127 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 C6orf201Q7Z4U5 140 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 NR2C2APQ86WQ0 139 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 LINC00311Q8N616 119 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 DTX3Q8N9I9 347 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 OR4F5Q8NH21 305 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 YIPF6Q96EC8 236 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 SULT4A1Q9BR01 284 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 RANBP3Q9H6Z4 567 aaPredicted RBP9.59□□□□□ -0.87
VPS52-213ENST00000461743 C12orf4Q9NQ89 552 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 TCF19Q9Y242 345 aa9.59□□□□□ -0.87
VPS52-213ENST00000461743 SDCBPO00560 298 aaPredicted RBP9.58□□□□□ -0.88
VPS52-213ENST00000461743 BRS3P32247 399 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 SDC2P34741 201 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 RAG2P55895 527 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 LOXL3P58215 753 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 HTD2P86397 168 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 HMGN3Q15651 99 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 SSX2Q16385 188 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 AWAT1Q58HT5 328 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 LY6G6FQ5SQ64 297 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 LDLRAD2Q5SZI1 272 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 BAIAP2L2Q6UXY1 529 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 C16orf82Q7Z2V1 217 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 AKAP14Q86UN6 197 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 OR6Q1Q8NGQ2 317 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 OR4K15Q8NH41 348 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 CCDC107Q8WV48 283 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 CENPOQ9BU64 300 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 FUNDC2Q9BWH2 189 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 C1RLQ9NZP8 487 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 JPT1Q9UK76 154 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 PSG11Q9UQ72 335 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 ETV7Q9Y603 341 aa9.58□□□□□ -0.88
VPS52-213ENST00000461743 FAM172BPA6NC97 362 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 SOCS1O15524 211 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 TXNL1O43396 289 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 AIREO43918 545 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 RGS11O94810 467 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 HBZP02008 142 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 IL3RAP26951 378 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 CD40LGP29965 261 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 MNDAP41218 407 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 VEGFCP49767 419 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 RAB7AP51149 207 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 CD300CQ08708 224 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 MADCAM1Q13477 382 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 TPTE2P1Q5T6R2 138 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 STEAP3Q658P3 488 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 Q6ZTK2 550 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 DYNAPQ8N1N2 210 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 OR10R2Q8NGX6 335 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 OR10X1Q8NGY0 326 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 RFESDQ8TAC1 157 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 TOMM40LQ969M1 308 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 RPEQ96AT9 228 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 ARHGAP5-AS1Q96IT6 56 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 OCSTAMPQ9BR26 566 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 PECRQ9BY49 303 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 BEX1Q9HBH7 125 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 TAF9BQ9HBM6 251 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 CHMP1AQ9HD42 196 aaPredicted RBP9.57□□□□□ -0.88
VPS52-213ENST00000461743 TNFRSF19Q9NS68 423 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 ABRACLQ9P1F3 81 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 GNG12Q9UBI6 72 aa9.57□□□□□ -0.88
VPS52-213ENST00000461743 TRAV39A0A0B4J263 110 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 ANKRD34BA5PLL1 514 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 SERPINE3A8MV23 424 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 LY6LH3BQJ8 138 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 TSPAN9O75954 239 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 DIRAS3O95661 229 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 LPLP06858 475 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 RCC1P18754 421 aaPredicted RBP9.56□□□□□ -0.88
VPS52-213ENST00000461743 ZNF137PP52743 207 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 TMEM50BP56557 158 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 MRPS15P82914 257 aaKnown RBP9.56□□□□□ -0.88
VPS52-213ENST00000461743 CTF1Q16619 201 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 SLC25A48Q6ZT89 311 aaKnown RBP9.56□□□□□ -0.88
VPS52-213ENST00000461743 OR8H3Q8N146 312 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 PIFOQ8TCI5 191 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 GALMQ96C23 342 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 RAB3CQ96E17 227 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 ZNF486Q96H40 463 aaPredicted RBP9.56□□□□□ -0.88
VPS52-213ENST00000461743 FAAP24Q9BTP7 215 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 NPFFR1Q9GZQ6 430 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 C16orf95Q9H693 158 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS52-213ENST00000461743 AK3Q9UIJ7 227 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 HILPDAQ9Y5L2 63 aa9.56□□□□□ -0.88
VPS52-213ENST00000461743 A0A0A6YYH2 397 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 A6NDX4 124 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 A6NJ64 397 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 RAB27BO00194 218 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 MFNGO00587 321 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 UPK1BO75841 260 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 PTTG1O95997 202 aa9.55□□□□□ -0.88
VPS52-213ENST00000461743 SLC2A2P11168 524 aaPredicted RBP9.55□□□□□ -0.88
VPS52-213ENST00000461743 HIST1H1DP16402 221 aaKnown RBP9.55□□□□□ -0.88
VPS52-213ENST00000461743 GNG10P50151 68 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms