RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RNF152Q8N8N0 203 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 TMEM104Q8NE00 496 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 CCDC107Q8WV48 283 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 APH1BQ8WW43 257 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 CYGBQ8WWM9 190 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 RGP1Q92546 391 aaPredicted RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 GALMQ96C23 342 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 NOL4LQ96MY1 436 aaPredicted RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 S1PR3Q99500 378 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 P2RX4Q99571 388 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 B9D2Q9BPU9 175 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 VCXQ9H320 206 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 DCLRE1BQ9H816 532 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 OR2S2Q9NQN1 319 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 ABRACLQ9P1F3 81 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 RCC2Q9P258 522 aaKnown RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 PEX16Q9Y5Y5 336 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 TRBV5-7A0A0A0MS05 114 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 TRAV39A0A0B4J263 110 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 A0A1W2PPE3 182 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 C12orf77C9JDV5 145 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 K7EIL1 84 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 MYL12BO14950 172 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 CRTAPO75718 401 aaPredicted RBP5.57□□□□□ -1.52
VPS41-208ENST00000448833 IGHG4P01861 327 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 HBZP02008 142 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 MGMTP16455 207 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 VAMP1P23763 118 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 REG1BP48304 166 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 WNT4P56705 351 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 TNP2Q05952 138 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 DIAPH2-AS1Q14236 149 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 MORN2Q502X0 79 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 XAF1Q6GPH4 301 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 C10orf99Q6UWK7 81 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 C8orf86Q6ZUL3 223 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 C8orf59Q8N0T1 100 aaPredicted RBP5.57□□□□□ -1.52
VPS41-208ENST00000448833 PRR18Q8N4B5 295 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 Q8N9W7 124 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 MUL1Q969V5 352 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 NEDD4LQ96PU5 975 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 SELENOIQ9C0D9 397 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 RIMS4Q9H426 269 aaPredicted RBP5.57□□□□□ -1.52
VPS41-208ENST00000448833 TAF9BQ9HBM6 251 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 PLSCR3Q9NRY6 295 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 PLCXD1Q9NUJ7 323 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 MBNL3Q9NUK0 354 aaKnown RBP5.57□□□□□ -1.52
VPS41-208ENST00000448833 STEAP1Q9UHE8 339 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 JPT1Q9UK76 154 aa5.57□□□□□ -1.52
VPS41-208ENST00000448833 hCG_2014768A0A024R1R8 64 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 IGHV3-72A0A0B4J1Y9 119 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 WI2-2373I1.2A0A1W2PRP0 233 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 YPEL1O60688 119 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 PDCD6O75340 191 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 BPNT1O95861 308 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 MAS1P04201 325 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 CELP19835 753 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 CD40LGP29965 261 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 HOXD3P31249 432 aaPredicted RBP5.56□□□□□ -1.52
VPS41-208ENST00000448833 MC5RP33032 325 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 RAB25P57735 213 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 KRTAP10-11P60412 298 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 RPS11P62280 158 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS41-208ENST00000448833 CT45A1Q5HYN5 189 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 UTF1Q5T230 341 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 GLT8D1Q68CQ7 371 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 FAM71F2Q6NXP2 309 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 ETV3LQ6ZN32 361 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 LCNL1Q6ZST4 164 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 FAM71E2Q8N5Q1 922 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 ZNF439Q8NDP4 499 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 OR2AK2Q8NG84 335 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 OR4K15Q8NH41 348 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 CT45A3Q8NHU0 189 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 KCNG3Q8TAE7 436 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 C4orf3Q8WVX3 66 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 PHYHIPQ92561 330 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 GGHQ92820 318 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 PGLYRP3Q96LB9 341 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 UBE2E2Q96LR5 201 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 Q96M66 194 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 WWC2-AS2Q96NR7 200 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 DERL3Q96Q80 235 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 YPEL2Q96QA6 119 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 OR14A2Q96R54 314 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 ZNF251Q9BRH9 671 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 PIPOXQ9P0Z9 390 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 KIAA1456Q9P272 454 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 CLEC2DQ9UHP7 191 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 ZNF107Q9UII5 783 aaPredicted RBP5.56□□□□□ -1.52
VPS41-208ENST00000448833 LINC00527Q9UJ94 153 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 MGAT4AQ9UM21 535 aa5.56□□□□□ -1.52
VPS41-208ENST00000448833 DNAH3Q8TD57 4116 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 TRAV8-7A0A075B6U6 113 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 IGHV3-43A0A0B4J1X8 118 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 A0A1W2PP11 408 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 RAB29O14966 203 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 ARPC1BO15143 372 aaKnown RBP5.55□□□□□ -1.52
VPS41-208ENST00000448833 OR8U8P0C7N1 319 aa5.55□□□□□ -1.52
VPS41-208ENST00000448833 IGHV3-43DP0DP04 118 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms