RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZNF841Q6ZN19 808 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 FGFRL1Q8N441 504 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 OR10A7Q8NGE5 316 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 OR4D10Q8NGI6 311 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 OR1L1Q8NH94 360 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 UBALD1Q8TB05 177 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 SLC25A21Q9BQT8 299 aaPredicted RBP11.74□□□□□ -0.53
SKA1-202ENST00000398452 CABLES2Q9BTV7 478 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 IDI2-AS1Q9NZ38 188 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 ONECUT1Q9UBC0 465 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 RPUSD1Q9UJJ7 312 aaKnown RBP11.74□□□□□ -0.53
SKA1-202ENST00000398452 JPT1Q9UK76 154 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 TRBV6-7A0A0A0MS04 114 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 VWC2LB2RUY7 222 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 NFYBP25208 207 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 S100GP29377 79 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 SLC6A1P30531 599 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 CEACAM6P40199 344 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 CCR6P51684 374 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 FXYD4P59646 89 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 ZNF273Q14593 569 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 C4orf48Q5BLP8 95 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 LPCAT3Q6P1A2 487 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 NRARPQ7Z6K4 114 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 TERB2Q8NHR7 220 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 GIMAP1Q8WWP7 306 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 EDARADDQ8WWZ3 215 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 SLC6A7Q99884 636 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 SLC2A8Q9NY64 477 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 NUBP2Q9Y5Y2 271 aa11.73□□□□□ -0.53
SKA1-202ENST00000398452 IGHV4-61A0A0C4DH41 118 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 RLN1P04808 185 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 NFYAP23511 347 aaPredicted RBP11.72□□□□□ -0.53
SKA1-202ENST00000398452 LMO4P61968 165 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 C11orf88Q6PI97 169 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 DHRS11Q6UWP2 260 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 C8orf46Q8TAG6 207 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 ZFAND1Q8TCF1 268 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 TOMM40LQ969M1 308 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 DMRTB1Q96MA1 342 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 FOXC2Q99958 501 aa11.72□□□□□ -0.53
SKA1-202ENST00000398452 C14orf166Q9Y224 244 aaKnown RBP11.72□□□□□ -0.53
SKA1-202ENST00000398452 HRNRQ86YZ3 2850 aaPredicted RBP11.72□□□□□ -0.53
SKA1-202ENST00000398452 ARID1AO14497 2285 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 IGHV3-43A0A0B4J1X8 118 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 A8MXK9 166 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 NPIPB11E5RHQ5 1161 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 C15orf65H3BRN8 121 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 F2RL2O00254 374 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 NDUFB6O95139 128 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 DHFRP00374 187 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 PPYP01298 95 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 TCRBP04435 133 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 IGHV3-43DP0DP04 118 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 CCL3L1P16619 93 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 LORP23490 312 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 OMGP23515 440 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 LUMP51884 338 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 ERVFRD-1P60508 538 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 LCN2P80188 198 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 SURF2Q15527 256 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 C17orf58Q2M2W7 97 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 ABCA11PQ4W5N1 156 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 CCBE1Q6UXH8 406 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 HEPN1Q6WQI6 88 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 Q6ZPA2 131 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 CENPSQ8N2Z9 138 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR2AK2Q8NG84 335 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR52L2PQ8NGH6 319 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR10V1Q8NGI7 309 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR52M1Q8NGK5 317 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 CHPT1Q8WUD6 406 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 DACT3Q96B18 629 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 Q96MF0 132 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 GSX1Q9H4S2 264 aaPredicted RBP11.71□□□□□ -0.53
SKA1-202ENST00000398452 RDH8Q9NYR8 311 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR1A1Q9P1Q5 309 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 OR2W1Q9Y3N9 320 aa11.71□□□□□ -0.53
SKA1-202ENST00000398452 M0R1W7 72 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 YPEL1O60688 119 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 RBP4P02753 201 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 H2AFB2P0C5Z0 115 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 ZNF735P0CB33 412 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 AADACP22760 399 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 RAB7AP51149 207 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 HERPUD1Q15011 391 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 OXA1LQ15070 435 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 PRAMEF5Q5TYX0 476 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 METTL11BQ5VVY1 283 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 H1FOOQ8IZA3 346 aaPredicted RBP11.7□□□□□ -0.54
SKA1-202ENST00000398452 ZDHHC22Q8N966 263 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 DUSP18Q8NEJ0 188 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 FAM216AQ8WUB2 273 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 SECTM1Q8WVN6 248 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 CREB3L1Q96BA8 519 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 YPEL2Q96QA6 119 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 TMPRSS13Q9BYE2 586 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 C20orf85Q9H1P6 137 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 NUDT15Q9NV35 164 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 GFOD1Q9NXC2 390 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms