RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF117Q03924 483 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 CCSMST1Q4G0I0 132 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FAM120AOSQ5T036 256 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 OR2G6Q5TZ20 316 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 PAQR9Q6ZVX9 377 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 CIARTQ8N365 385 aaPredicted RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 SIGLECL1Q8N7X8 197 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 C5orf17Q8NAS9 161 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 OR10S1Q8NGN2 331 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GPX8Q8TED1 209 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 NEURL2Q9BR09 285 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 BPESC1Q9GZL8 116 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 PHLDA3Q9Y5J5 127 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GPR179Q6PRD1 2367 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FITM1A5D6W6 292 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 H7C1C5 153 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SPART-AS1P0CW21 52 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 UBE2BP63146 152 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GPNMBQ14956 572 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SPHARQ15513 63 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SPSB3Q6PJ21 355 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 ACOT7LQ6ZUV0 252 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 ZNF439Q8NDP4 499 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GNPNAT1Q96EK6 184 aaPredicted RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 ARHGAP5-AS1Q96IT6 56 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 PKIBQ9C010 78 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 AUNIPQ9H7T9 357 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 BABAM2Q9NXR7 383 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FBXL7Q9UJT9 491 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 NUPR2A6NF83 97 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 RFPL4AA6NLU0 287 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 RFPL4AL1F8VTS6 287 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 TMEM178BH3BS89 294 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SPINT1O43278 529 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 BTF3P20290 206 aaKnown RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 ATP6V1FQ16864 119 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SLC25A53Q5H9E4 307 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 NCMAPQ5T1S8 102 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 CFAP77Q6ZQR2 320 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 OR8D4Q8NGM9 314 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 LSM2Q9Y333 95 aaKnown RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 H3BRM9 83 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 HSD17B1P14061 328 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 PTGDSP41222 190 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GAS1P54826 345 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 OR2B11Q5JQS5 317 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 HMGN2P46Q86SG4 172 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FCRL1Q96LA6 429 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SDR39U1Q9NRG7 319 aaPredicted RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 NTNG1Q9Y2I2 539 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 A0A0J9YW62 118 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 A0A1W2PPK0 400 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 GGTLC3B5MD39 225 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CDRT1O95170 752 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 POLR2IP36954 125 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 RPL32P62910 135 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 TIAL1Q01085 375 aaKnown RBP eCLIP3.49□□□□□ -1.85
USH2A-202ENST00000366942 FAM27BQ5VT28 67 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CORO6Q6QEF8 472 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 PRSS45Q7RTY3 260 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ZNF547Q8IVP9 402 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ZFP82Q8N141 532 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RNF122Q9H9V4 155 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 TMEM167BQ9NRX6 74 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 NHSQ6T4R5 1651 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 IGKV3D-15A0A087WSY6 115 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 IGKV3-15P01624 115 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 DYNLT3P51808 116 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SUMO2P61956 95 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 KHDC3LQ587J8 217 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SPATA31B1PQ5VZV4 182 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 BCDIN3DQ7Z5W3 292 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 C20orf196Q8IYI0 205 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 WFIKKN1Q96NZ8 548 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 C19orf24Q9BVV8 132 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 MRPL18Q9H0U6 180 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MEGF9Q9H1U4 602 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SH2D2AQ9NP31 389 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 SEMA5BQ9P283 1151 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 B9D1Q9UPM9 204 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CHD2O14647 1828 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MBD3L4A6NDZ8 208 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MBD3L3A6NE82 208 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 MBD3L5A6NJ08 208 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 DHRS7CA6NNS2 312 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 F5H5P2 479 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ZNF561-AS1K7EIQ3 104 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 MLNRO43193 412 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 RPL35AP18077 110 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 COL8A1P27658 744 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 WNT4P56705 351 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 LSM3P62310 102 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 RPL36AP83881 106 aaKnown RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 C5orf64Q2M2E5 130 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 CCDC58Q4VC31 144 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 PRSS54Q6PEW0 395 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 FA2HQ7L5A8 372 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 ISCA2Q86U28 154 aa3.49□□□□□ -1.85
USH2A-202ENST00000366942 MBD3L2Q8NHZ7 208 aaPredicted RBP3.49□□□□□ -1.85
USH2A-202ENST00000366942 CRYGNQ8WXF5 182 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms