RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 SIT1Q9Y3P8 196 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 TMEM56-RWDD3S4R434 201 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 PIEZO2Q9H5I5 2752 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 ZNF816-ZNF321PA0A0X1KG74 233 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 hCG_38984A0A1B0GV85 526 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 XKRY2A2RUG3 117 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 OR6C6A6NF89 314 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 ADAM20O43506 726 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 CST7O76096 145 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 HSPB1P04792 205 aaKnown RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 SSR4P51571 173 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 BPIFB3P59826 476 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 ZNF92Q03936 586 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 CLN3Q13286 438 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 CXorf66Q5JRM2 361 aaPredicted RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 NCR3LG1Q68D85 454 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 TEX38Q6PEX7 206 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 ZNF705AQ6ZN79 300 aaPredicted RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 MRPL41Q8IXM3 137 aaKnown RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 TMEM217Q8N7C4 229 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 CPT1CQ8TCG5 803 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 CCDC74BQ96LY2 380 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 ALKBH3Q96Q83 286 aaPredicted RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 CABLES2Q9BTV7 478 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 SRXN1Q9BYN0 137 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 VAX2Q9UIW0 290 aa7.48□□□□□ -1.21
VCL-207ENST00000624354 MRPS17Q9Y2R5 130 aaKnown RBP7.48□□□□□ -1.21
VCL-207ENST00000624354 PATE3B3GLJ2 98 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 ZNF732B4DXR9 585 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 PROB1E7EW31 1015 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 CBR3O75828 277 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 HBE1P02100 147 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 DYNLT3P51808 116 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 RND2P52198 227 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 RAC3P60763 192 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 PSG4Q00888 419 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 TLE4Q04727 773 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 BAXQ07812 192 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 SSPNQ14714 243 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 Q6ZPA2 131 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 SLC25A26Q70HW3 274 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 ZNF573Q86YE8 665 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 SELENOHQ8IZQ5 122 aaKnown RBP7.47□□□□□ -1.21
VCL-207ENST00000624354 IL22RA1Q8N6P7 574 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 ZNF611Q8N823 705 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 OR10A7Q8NGE5 316 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 TMEM18Q96B42 140 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 TECTBQ96PL2 329 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 CDH20Q9HBT6 801 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 TRBV24-1A0A075B6N3 115 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 DNPH1O43598 174 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 VDAC1P21796 283 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 PCBD1P61457 104 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 COL10A1Q03692 680 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 ICAM4Q14773 271 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 AAED1Q7RTV5 226 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 BATF2Q8N1L9 274 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 NEK7Q8TDX7 302 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 EXTL1Q92935 676 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 RBMXL1Q96E39 390 aaKnown RBP7.47□□□□□ -1.21
VCL-207ENST00000624354 HIST1H2AAQ96QV6 131 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 FOXB1Q99853 325 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 DUSP23Q9BVJ7 150 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 GLRX2Q9NS18 164 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 DIDO1Q9BTC0 2240 aaKnown RBP7.47□□□□□ -1.21
VCL-207ENST00000624354 LOC102723996A0A087X1L8 192 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 DUXBA0A1W2PPF3 345 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 TMEM210A6NLX4 147 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 SCGB1D1O95968 90 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 C1orf194Q5T5A4 169 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 ABLIM2Q6H8Q1 611 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 CALHM1Q8IU99 346 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 CMTM1Q8IZ96 169 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 WDR54Q9H977 334 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 PROK2Q9HC23 129 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 SHANK1Q9Y566 2161 aa7.47□□□□□ -1.21
VCL-207ENST00000624354 IGHV1-45A0A0A0MS14 117 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 ATXN7O15265 892 aaPredicted RBP7.46□□□□□ -1.21
VCL-207ENST00000624354 OPN1MWP04001 364 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 OPN1MW2P0DN77 364 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 OPN1MW3P0DN78 364 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 FGF5P12034 268 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 MMP9P14780 707 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 NPBWR2P48146 333 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 CARD18P57730 90 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 RPL23AP62750 156 aaKnown RBP7.46□□□□□ -1.21
VCL-207ENST00000624354 RUNX1Q01196 453 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 PMS2P11Q13670 270 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 CEACAM16Q2WEN9 425 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 ZNF506Q5JVG8 444 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 ZNF880Q6PDB4 577 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 BTNL3Q6UXE8 466 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 ZNF818PQ6ZRF7 136 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 GAPTQ8N292 157 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 OR2H1Q9GZK4 316 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 TMEM242Q9NWH2 141 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 GAB2Q9UQC2 676 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 CHD8Q9HCK8 2581 aa7.46□□□□□ -1.21
VCL-207ENST00000624354 ACACAQ13085 2346 aa7.46□□□□□ -1.22
VCL-207ENST00000624354 ZNF318Q5VUA4 2279 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms