RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C11orf40Q8WZ69 217 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 WDR89Q96FK6 387 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 MBOAT4Q96T53 435 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 HCAR1Q9BXC0 346 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SIGLEC7Q9Y286 467 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 K7EQM0 130 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 OR13C7P0DN81 318 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 HSD17B1P14061 328 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 RPS4XP62701 263 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 GAGE1Q13065 139 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 OCIAD2Q56VL3 154 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 AWAT1Q58HT5 328 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM268Q5VZI3 342 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF660Q6AZW8 331 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 TOMM20LQ6UXN7 152 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 OR5M8Q8NGP6 311 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 PHYHIPLQ96FC7 376 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 HHATLQ9HCP6 504 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 NRIP3Q9NQ35 241 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 DECR2Q9NUI1 292 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 A0A0B4J2A0 478 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 HSD17B6O14756 317 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 GRPP07492 148 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 MELTFP08582 738 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 PGA4P0DJD7 388 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 ACKR3P25106 362 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 PSG4Q00888 419 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 STEAP1BQ6NZ63 245 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 UNQ5815/PRO19632Q6UWF5 114 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF709Q8N972 641 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF738Q8NE65 137 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 RPUSD4Q96CM3 377 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 SEC22AQ96IW7 307 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM38BQ9NVV0 291 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 STEAP1Q9UHE8 339 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 SHPKQ9UHJ6 478 aa6.74□□□□□ -1.33
LIMCH1-219ENST00000514096 IGHV4-30-2A0A087WSY4 118 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 MEIKINA0A087WXM9 373 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 IGHV2OR16-5A0A0B4J2B6 119 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 PRSS37A4D1T9 235 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 INAFM1C9JVW0 142 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 CREBL2O60519 120 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 TGFAP01135 160 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 CTXN2P0C2S0 81 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 PTH2RP49190 550 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SMIM11AP58511 58 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 TBC1D28Q2M2D7 210 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM123Q8N131 208 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 OR51G2Q8NGK0 314 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC25A40Q8TBP6 338 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 PPP1R14AQ96A00 147 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SAT2Q96F10 170 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 DUSP21Q9H596 190 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 ZFP30Q9Y2G7 519 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 A0A1W2PRD5 423 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 A0A1W2PRF3 423 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 A0A1W2PRM7 423 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SHISA9B4DS77 424 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC33A1O00400 549 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 LYPD3O95274 346 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 TRGC2P03986 189 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 FKBP2P26885 142 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 HNRNPA3P51991 378 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 PMS2P11Q13670 270 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 CHRFAM7AQ494W8 412 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 Q6ZTK2 550 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 TMED4Q7Z7H5 227 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 INO80EQ8NBZ0 244 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 OR4F15Q8NGB8 312 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 OR52N4Q8NGI2 321 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 OR1N2Q8NGR9 330 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 SECTM1Q8WVN6 248 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 PIGTQ969N2 578 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 NICN1Q9BSH3 213 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 HSF4Q9ULV5 492 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF593O00488 134 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 FBXO24O75426 580 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 RPA2P15927 270 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 CD1BP29016 333 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 MPV17P39210 176 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 GDNFP39905 211 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 ERVFC1-1P60608 527 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 RAP2BP61225 183 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF672Q499Z4 452 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 C20orf196Q8IYI0 205 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 HSD17B11Q8NBQ5 300 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 CSNK2A3Q8NEV1 391 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 OR52B4Q8NGK2 314 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 IL22RA2Q969J5 263 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 FAM71F1Q96KD3 344 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 JKAMPQ9P055 326 aa6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 STRAPQ9Y3F4 350 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-219ENST00000514096 A6NIZ1 184 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 IGHV4-39P01824 125 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 IGFBP2P18065 325 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 HGFACQ04756 655 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 MMDQ15546 238 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 MSMPQ1L6U9 139 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 PRR31Q5SQ13 230 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FAM57BQ71RH2 274 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms