RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ELOVL1Q9BW60 279 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 OR2H1Q9GZK4 316 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 RBKSQ9H477 322 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 IL36GQ9NZH8 169 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 TSTD3H0UI37 97 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 SLC31A2O15432 143 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 GZMHP20718 246 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 ERVS71-1P61550 626 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 IL24Q13007 206 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 OR8B8Q15620 311 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 ADIRFQ15847 76 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF664Q8N3J9 261 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 SNIP1Q8TAD8 396 aaKnown RBP15.76■□□□□ 0.11
CCDC3-201ENST00000378825 WFIKKN1Q96NZ8 548 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 CLEC18AA5D8T8 446 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 VAMP5O95183 116 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 NAPSAO96009 420 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 STX12Q86Y82 276 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 FAM185AQ8N0U4 392 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 CLEC18CQ8NCF0 446 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 OR56B2PQ8NGI1 322 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 CLDN23Q96B33 292 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 PLA2G3Q9NZ20 509 aa15.76■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF816-ZNF321PA0A0X1KG74 233 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 SSTP61278 116 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 FOXB1Q99853 325 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 DUSP23Q9BVJ7 150 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 PLK3Q9H4B4 646 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 CISD1Q9NZ45 108 aaKnown RBP15.75■□□□□ 0.11
CCDC3-201ENST00000378825 PRRC2CQ9Y520 2896 aaKnown RBP15.75■□□□□ 0.11
CCDC3-201ENST00000378825 ARGFXA6NJG6 315 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 PATE3B3GLJ2 98 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 ST8SIA5O15466 376 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 CXCL13O43927 109 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 IFNA5P01569 189 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 CST2P09228 141 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 TRIM61Q5EBN2 209 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 CDH20Q9HBT6 801 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 MTCH1Q9NZJ7 389 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 PTRH2Q9Y3E5 179 aaKnown RBP15.75■□□□□ 0.11
CCDC3-201ENST00000378825 R4GN57 208 aa15.75■□□□□ 0.11
CCDC3-201ENST00000378825 TUSC2O75896 110 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IGKV1-39P01597 117 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IGKV1D-39P04432 117 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 CCL4P13236 92 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 PCSK4Q6UW60 755 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 H1FOOQ8IZA3 346 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 LILRB2Q8N423 598 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 GPR87Q9BY21 358 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 CACNG5Q9UF02 275 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 LAMP3Q9UQV4 416 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 HS3ST1O14792 307 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IL18BPO95998 194 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IGKV1D-33P01593 117 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IGKV1-33P01594 117 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 AAED1Q7RTV5 226 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 C16orf82Q7Z2V1 217 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 OR2V1Q8NHB1 315 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 MAFAQ8NHW3 353 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 RNASE11Q8TAA1 199 aaKnown RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 GATAD1Q8WUU5 269 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IL1F10Q8WWZ1 152 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 RDH5Q92781 318 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF705GA8MUZ8 300 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 SYNGR1O43759 233 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 PDGFBP01127 241 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 DEFA4P12838 97 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 F2RP25116 425 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 DSCR4P56555 118 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 Q3ZCU0 254 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 IFI44Q8TCB0 444 aa15.74■□□□□ 0.11
CCDC3-201ENST00000378825 RPUSD4Q96CM3 377 aaKnown RBP15.74■□□□□ 0.11
CCDC3-201ENST00000378825 TRBV24-1A0A075B6N3 115 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 TRAV1-1A0A0B4J248 108 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 B4DEV8 164 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 RFPL3SP0C7P2 107 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 PRR18Q8N4B5 295 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF525Q8N782 197 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 OR10A7Q8NGE5 316 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 OR5D13Q8NGL4 314 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 ABHD3Q8WU67 409 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 PRDM6Q9NQX0 595 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 ERRFI1Q9UJM3 462 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-201ENST00000378825 PITPNC1Q9UKF7 332 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 A0A096LPE4 126 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 A0A1W2PPZ6 126 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF716A6NP11 495 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 TAS2R60P59551 318 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 USF2Q15853 346 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-201ENST00000378825 KRTAP27-1Q3LI81 207 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 MRPL14Q6P1L8 145 aaKnown RBP15.73■□□□□ 0.11
CCDC3-201ENST00000378825 TGIF2LXQ8IUE1 241 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 OR1A1Q9P1Q5 309 aa15.73■□□□□ 0.11
CCDC3-201ENST00000378825 C19orf25Q9UFG5 118 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-201ENST00000378825 CACNA1DQ01668 2161 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 H0Y980 276 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 CD81P60033 236 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 RPS16P62249 146 aaKnown RBP15.72■□□□□ 0.11
CCDC3-201ENST00000378825 RAC1P63000 192 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 TMEM183AQ8IXX5 376 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms