RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 WIPI2Q9Y4P8 454 aa11.87□□□□□ -0.51
USF1-202ENST00000368020 ZGRF1Q86YA3 2104 aa11.87□□□□□ -0.51
USF1-202ENST00000368020 A0A1B0GWJ7 208 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 RNF212BA8MTL3 300 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 CECR9P0C854 216 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 FAM157CP0CG43 387 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 F2RP25116 425 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 LMO1P25800 156 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 RAB5CP51148 216 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 ERVS71-1P61550 626 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 SELENOHQ8IZQ5 122 aaKnown RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 OR10V1Q8NGI7 309 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 LHFPL5Q8TAF8 219 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 PRR7Q8TB68 274 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 C1QTNF6Q9BXI9 259 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 SLC25A31Q9H0C2 315 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 SPEF1Q9Y4P9 236 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 INTS1Q8N201 2190 aaKnown RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 IGHV2OR16-5A0A0B4J2B6 119 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 IGKV1D-13A0A0B4J2D9 117 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 TMEM30CPA0ZSE6 113 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 IFNL4K9M1U5 179 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 HSD17B6O14756 317 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 PGLYRP1O75594 196 aaPredicted RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 HAND1O96004 215 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 SEC11BP0C7V7 166 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 IGKV1-13P0DP09 117 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 RCC1P18754 421 aaPredicted RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 TIMP3P35625 211 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 MPV17P39210 176 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 CD200P41217 278 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 HMGN3Q15651 99 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 SMIM21Q3B7S5 101 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 C20orf204Q6ZNR8 217 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 OR52M1Q8NGK5 317 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 ARV1Q9H2C2 271 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 PARP11Q9NR21 331 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 CCL28Q9NRJ3 127 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 LIN7CQ9NUP9 197 aaKnown RBP11.86□□□□□ -0.51
USF1-202ENST00000368020 LUZP4Q9P127 313 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 COL6A6A6NMZ7 2263 aa11.86□□□□□ -0.51
USF1-202ENST00000368020 POLEQ07864 2286 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 SIRPB1O00241 398 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 HSPA12AO43301 675 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 SERPINE2P07093 398 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 GRPP07492 148 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 FOXF2Q12947 444 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 ZNF266Q14584 549 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 SWI5Q1ZZU3 235 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 NMSQ5H8A3 153 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 TIMM23BQ5SRD1 257 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 SLC35E4Q6ICL7 350 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 SPAG16Q8N0X2 631 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 CISD2Q8N5K1 135 aaKnown RBP11.85□□□□□ -0.51
USF1-202ENST00000368020 ZNF610Q8N9Z0 462 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 ZBTB34Q8NCN2 500 aa11.85□□□□□ -0.51
USF1-202ENST00000368020 USB1Q9BQ65 265 aaKnown RBP11.85□□□□□ -0.51
USF1-202ENST00000368020 ERRFI1Q9UJM3 462 aaPredicted RBP11.85□□□□□ -0.51
USF1-202ENST00000368020 A0A1B0GU03 582 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 NKX2-6A6NCS4 301 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 LGALS8O00214 317 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 F2RL1P55085 397 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 VAMP2P63027 116 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 BAXQ07812 192 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 PJVKQ0ZLH3 352 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 MSMO1Q15800 293 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 FAM209AQ5JX71 171 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 C1orf185Q5T7R7 199 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 TRAT1Q6PIZ9 186 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 FAM90A1Q86YD7 464 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 OR2C3Q8N628 320 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 COMMD1Q8N668 190 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 BPIFCQ8NFQ6 507 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 FAM216AQ8WUB2 273 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 IL1F10Q8WWZ1 152 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 SNRNP40Q96DI7 357 aaKnown RBP11.84□□□□□ -0.51
USF1-202ENST00000368020 SFXN3Q9BWM7 321 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 SEBOXQ9HB31 216 aaPredicted RBP11.84□□□□□ -0.51
USF1-202ENST00000368020 TINAGQ9UJW2 476 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 RCL1Q9Y2P8 373 aaKnown RBP11.84□□□□□ -0.51
USF1-202ENST00000368020 TMA7Q9Y2S6 64 aaKnown RBP11.84□□□□□ -0.51
USF1-202ENST00000368020 SLC25A15Q9Y619 301 aa11.84□□□□□ -0.51
USF1-202ENST00000368020 IGHV1-18A0A0C4DH31 117 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 OOEPA6NGQ2 149 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 MLNRO43193 412 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 MED6O75586 246 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 WISP2O76076 250 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 AGFG2O95081 481 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 GLI4P10075 376 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 TDGF1P3P51864 188 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 PAX5Q02548 391 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 PLPPR1Q8TBJ4 325 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 LSM10Q969L4 123 aaKnown RBP11.83□□□□□ -0.52
USF1-202ENST00000368020 NARS2Q96I59 477 aaKnown RBP11.83□□□□□ -0.52
USF1-202ENST00000368020 GINS3Q9BRX5 216 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 OPN3Q9H1Y3 402 aaPredicted RBP11.83□□□□□ -0.52
USF1-202ENST00000368020 PLEKHF2Q9H8W4 249 aa11.83□□□□□ -0.52
USF1-202ENST00000368020 LYRM2Q9NU23 88 aaPredicted RBP11.83□□□□□ -0.52
USF1-202ENST00000368020 A6NLC8 198 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms