RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ICAM4Q14773 271 aa15.95■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF506Q5JVG8 444 aa15.95■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF251Q9BRH9 671 aa15.95■□□□□ 0.14
CPSF3-201ENST00000238112 WSB1Q9Y6I7 421 aa15.95■□□□□ 0.14
CPSF3-201ENST00000238112 TNRC6AQ8NDV7 1962 aaKnown RBP15.95■□□□□ 0.14
CPSF3-201ENST00000238112 LILRA1O75019 489 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 CNOT4O95628 575 aaKnown RBP15.94■□□□□ 0.14
CPSF3-201ENST00000238112 SLC25A6P12236 298 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 FREM1Q5H8C1 2179 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 FREM2Q5SZK8 3169 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 HEPN1Q6WQI6 88 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF429Q86V71 674 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 THNSL2Q86YJ6 484 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 C1QL4Q86Z23 238 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 CYB561D1Q8N8Q1 229 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 TMEM105Q8N8V8 129 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 TCTEX1D2Q8WW35 142 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 RAB40CQ96S21 281 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 CABLES2Q9BTV7 478 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 TRIOBPQ9H2D6 2365 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 SEBOXQ9HB31 216 aaPredicted RBP15.94■□□□□ 0.14
CPSF3-201ENST00000238112 DLL3Q9NYJ7 618 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 DEGS1O15121 323 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 OR8U8P0C7N1 319 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 ZXDAP98168 799 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 TMEM267Q0VDI3 215 aaPredicted RBP15.94■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF880Q6PDB4 577 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 OR10V1Q8NGI7 309 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 CLDND2Q8NHS1 167 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 MUCL1Q96DR8 90 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 YPEL4Q96NS1 127 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 NIPSNAP3BQ9BS92 247 aa15.94■□□□□ 0.14
CPSF3-201ENST00000238112 H0YL77 283 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 TXNL1O43396 289 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 RNPS1Q15287 305 aaKnown RBP15.93■□□□□ 0.14
CPSF3-201ENST00000238112 LPAL2Q16609 132 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 DOCK10Q96BY6 2186 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 LRP5LA4QPB2 252 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 FBP1P09467 338 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 WNT5AP41221 380 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 RPS10P46783 165 aaKnown RBP15.93■□□□□ 0.14
CPSF3-201ENST00000238112 DLK1P80370 383 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 CLN3Q13286 438 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 SP5Q6BEB4 398 aaPredicted RBP15.93■□□□□ 0.14
CPSF3-201ENST00000238112 NUFIP2Q7Z417 695 aaKnown RBP15.93■□□□□ 0.14
CPSF3-201ENST00000238112 P4HA3Q7Z4N8 544 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 TMEM251Q8N6I4 163 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 DDA1Q9BW61 102 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 PKIBQ9C010 78 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 PLA2G3Q9NZ20 509 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 OR1A1Q9P1Q5 309 aa15.93■□□□□ 0.14
CPSF3-201ENST00000238112 DMDP11532 3685 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 A0A087WWC5 75 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF727A8MUV8 499 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 RHBDL1O75783 438 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 CA6P23280 308 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 OR2T2Q6IF00 324 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 LINC00696Q6ZRV3 163 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 TVP23CQ96ET8 276 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 HIPK2Q9H2X6 1198 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 NIT2Q9NQR4 276 aa15.92■□□□□ 0.14
CPSF3-201ENST00000238112 C3orf80F5H4A9 247 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 C3AR1Q16581 482 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 IZUMO4Q1ZYL8 232 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 KHDC3LQ587J8 217 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 PRR18Q8N4B5 295 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 SCGB1C1Q8TD33 95 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 CACNG5Q9UF02 275 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 RBM7Q9Y580 266 aaKnown RBP15.91■□□□□ 0.14
CPSF3-201ENST00000238112 MMP24Q9Y5R2 645 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 C9orf172C9J069 976 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 CDX2Q99626 313 aaPredicted RBP15.91■□□□□ 0.14
CPSF3-201ENST00000238112 BCL2L14Q9BZR8 327 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 OR51I2Q9H344 312 aa15.91■□□□□ 0.14
CPSF3-201ENST00000238112 ARGFXA6NJG6 315 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 KIAA1324LA8MWY0 1029 aaPredicted RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 NPIPB11E5RHQ5 1161 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 J3QT63 122 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 FABP1P07148 127 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 EIF2S3P41091 472 aaKnown RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 C1orf210Q8IVY1 113 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 ZNF295-AS1Q8N0V1 137 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 LSM10Q969L4 123 aaKnown RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 C12orf49Q9H741 205 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 PRSS50Q9UI38 385 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 PPP1R3CQ9UQK1 317 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 SYNGR2O43760 224 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 MDH2P40926 338 aaKnown RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 KIAA0141Q14154 515 aaPredicted RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 SPATA46Q5T0L3 261 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 Q6ZRM9 215 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 MOB1BQ7L9L4 216 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 NANOS1Q8WY41 292 aaKnown RBP15.9■□□□□ 0.14
CPSF3-201ENST00000238112 SPRY4Q9C004 299 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 FOXJ2Q9P0K8 574 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 GNG13Q9P2W3 67 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 KCNS2Q9ULS6 477 aa15.9■□□□□ 0.14
CPSF3-201ENST00000238112 TRAV1-1A0A0B4J248 108 aa15.89■□□□□ 0.13
CPSF3-201ENST00000238112 CLN5O75503 358 aa15.89■□□□□ 0.13
CPSF3-201ENST00000238112 WNT2P09544 360 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms