RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NAT8Q9UHE5 227 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 C19orf53Q9UNZ5 99 aaPredicted RBP8.87□□□□□ -0.99
VPS39-214ENST00000614932 TRAPPC1Q9Y5R8 145 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 HS3ST3A1Q9Y663 406 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 SPAG17Q6Q759 2223 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 A0A1W2PPC4 97 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 OR6C6A6NF89 314 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 WIPF3A6NGB9 483 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ESDP10768 282 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 CCKBRP32239 447 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 RBMXP38159 391 aaKnown RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 EMP2P54851 167 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ODF1Q14990 250 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 PATZ1Q9HBE1 687 aaKnown RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 GNG13Q9P2W3 67 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 PRSS50Q9UI38 385 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 MED31Q9Y3C7 131 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ARID1AO14497 2285 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 TRAPPC2LH3BP13 241 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 TAX1BP3O14907 124 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 IGKV1D-16P01601 117 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 DBHP09172 617 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 RPL15P61313 204 aaKnown RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 PLAURQ03405 335 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ZNF117Q03924 483 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 MGAT2Q10469 447 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ZNF266Q14584 549 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 FHL5Q5TD97 284 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 CHRDL2Q6WN34 429 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 TMEM217Q8N7C4 229 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 PARLQ9H300 379 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 OR51I2Q9H344 312 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 RXFP3Q9NSD7 469 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 TMEM38BQ9NVV0 291 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 NSG1A0A0A6YYJ2 146 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 TRAF3IP2O43734 574 aaPredicted RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 CD99P14209 185 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 SRP14P37108 136 aaKnown RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 MSMO1Q15800 293 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 VAX1Q5SQQ9 334 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 RAET1LQ5VY80 246 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 RNF44Q7L0R7 432 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 Q8N976 141 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 CADM4Q8NFZ8 388 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.86□□□□□ -0.99
VPS39-214ENST00000614932 CHODLQ9H9P2 273 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 PXMP4Q9Y6I8 212 aa8.86□□□□□ -0.99
VPS39-214ENST00000614932 PCDH15Q96QU1 1955 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 IGHV5-51A0A0C4DH38 117 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 KIR2DS5A0A0G2JLQ3 304 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 A0A0G2JNG1 304 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 KIR2DS3K7RE56 304 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 JMJD7P0C870 316 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 AZU1P20160 251 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 OR1D4P47884 311 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 MTCP1P56278 107 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 LCN2P80188 198 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 KIR2DS5Q14953 304 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 PSMF1Q92530 271 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 P2RX4Q99571 388 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 ZNF160Q9HCG1 818 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 PILRBQ9UKJ0 227 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 IGHV1OR15-9A0A0B4J2B8 117 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 OR2T8A6NH00 312 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 C17orf51A8MQB3 221 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 ABHD16AO95870 558 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 CRYGCP07315 174 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 BCL2P10415 239 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 CKS1BP61024 79 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 PLPPR5Q32ZL2 321 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 PRAMEF5Q5TYX0 476 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 PRAMEF6Q5VXH4 476 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 KCNIP4Q6PIL6 250 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 CDRT4Q8N9R6 151 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 WDYHV1Q96HA8 205 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 POM121L2Q96KW2 1035 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 LYRM4Q9HD34 91 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 LRIT1Q9P2V4 623 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 IER3IP1Q9Y5U9 82 aa8.85□□□□□ -0.99
VPS39-214ENST00000614932 ALPK2Q86TB3 2170 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 FOXS1O43638 330 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 SLC6A8P48029 635 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 KRTDAPP60985 99 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 ARG2P78540 354 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 COLCA1Q6ZS62 124 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 CYP2G1PQ6ZSU1 146 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 CALHM1Q8IU99 346 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 UBALD2Q8IYN6 164 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 MUC15Q8N387 334 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 OR2Y1Q8NGV0 311 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 ANAPC16Q96DE5 110 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 GUCD1Q96NT3 240 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 OR2V2Q96R30 315 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 SAMD10Q9BYL1 202 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 FBXL7Q9UJT9 491 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 UNC13CQ8NB66 2214 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 FREM2Q5SZK8 3169 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 TRAV1-1A0A0B4J248 108 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms