RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FGF16O43320 207 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 TFF1P04155 84 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 GLAP06280 429 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 RNF141Q8WVD5 230 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 NARS2Q96I59 477 aaKnown RBP13.82□□□□□ -0.2
COL4A1-204ENST00000543140 TMED3Q9Y3Q3 217 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 APC2O95996 2303 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 DMXL2Q8TDJ6 3036 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 NBEAQ8NFP9 2946 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 CHD3Q12873 2000 aaKnown RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 IGHV1-18A0A0C4DH31 117 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 E5RGE8 158 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 SH2D1BO14796 132 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 FBXO24O75426 580 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 AKR1C2P52895 323 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 AKR1C1Q04828 323 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 PRAMEF6Q5VXH4 476 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF324BQ6AW86 544 aaPredicted RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF880Q6PDB4 577 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 CMTM1Q8IZ96 169 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 DNTTIP1Q9H147 329 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 NSG2Q9Y328 171 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 OR2W1Q9Y3N9 320 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ICE1Q9Y2F5 2266 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 DIDO1Q9BTC0 2240 aaKnown RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 IGHV2OR16-5A0A0B4J2B6 119 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF705EA8MWA4 302 aaPredicted RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 TAAR5O14804 337 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ST8SIA3O43173 380 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 FAM157CP0CG43 387 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ARHGDIBP52566 201 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF497Q6ZNH5 498 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 Q6ZR03 302 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 Q6ZS92 163 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 SELENOHQ8IZQ5 122 aaKnown RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 BPIFCQ8NFQ6 507 aa13.81□□□□□ -0.2
COL4A1-204ENST00000543140 LILRB1Q8NHL6 650 aaPredicted RBP13.81□□□□□ -0.2
COL4A1-204ENST00000543140 MBD3L4A6NDZ8 208 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 MBD3L3A6NE82 208 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 MBD3L5A6NJ08 208 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 OR5H1A6NKK0 313 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 PGLYRP1O75594 196 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 RND3P61587 244 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF146Q15072 292 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 C11orf53Q8IXP5 236 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 H1FOOQ8IZA3 346 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 RBMXL3Q8N7X1 1067 aaKnown RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 OR51H1Q8NH63 302 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 MBD3L2Q8NHZ7 208 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 SNIP1Q8TAD8 396 aaKnown RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 MARC2Q969Z3 335 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 TMEM56Q96MV1 263 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 RHOFQ9HBH0 211 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 ZDHHC8Q9ULC8 765 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 RCL1Q9Y2P8 373 aaKnown RBP13.8□□□□□ -0.2
COL4A1-204ENST00000543140 FAM215AQ9Y5M1 114 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 TMEM56-RWDD3S4R434 201 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 DCHS1Q96JQ0 3298 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 HSPA12AO43301 675 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 SRPXP78539 464 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 P2RY6Q15077 328 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 PLEKHA2Q9HB19 425 aa13.8□□□□□ -0.2
COL4A1-204ENST00000543140 TMEM210A6NLX4 147 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 ADAM20O43506 726 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 PSPNO60542 156 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 NXPH3O95157 252 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 HAND1O96004 215 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 IGLV1-44P01699 117 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 APOC3P02656 99 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF83P51522 516 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 OR4D5Q8NGN0 318 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 MAGT1Q9H0U3 335 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.79□□□□□ -0.2
COL4A1-204ENST00000543140 B8ZZF3 427 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 CDS2O95674 445 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 GCH1P30793 250 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 MDH2P40926 338 aaKnown RBP13.79□□□□□ -0.2
COL4A1-204ENST00000543140 ASCL1P50553 236 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF718Q3SXZ3 478 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 BEND4Q6ZU67 534 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 BOD1Q96IK1 185 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 BCL2L14Q9BZR8 327 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 PARP12Q9H0J9 701 aaKnown RBP13.79□□□□□ -0.2
COL4A1-204ENST00000543140 PIGMQ9H3S5 423 aa13.79□□□□□ -0.2
COL4A1-204ENST00000543140 NHLH2Q02577 135 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF474Q6S9Z5 364 aaPredicted RBP13.78□□□□□ -0.2
COL4A1-204ENST00000543140 DMBX1Q8NFW5 382 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 LRFN3Q9BTN0 628 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 CABLES2Q9BTV7 478 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 CXXC4Q9H2H0 198 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 TAAR3PQ9P1P4 343 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 LPAR3Q9UBY5 353 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 PROB1E7EW31 1015 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 POLR2GP62487 172 aaKnown RBP eCLIP13.78□□□□□ -0.2
COL4A1-204ENST00000543140 BTN1A1Q13410 526 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 CXorf66Q5JRM2 361 aaPredicted RBP13.78□□□□□ -0.2
COL4A1-204ENST00000543140 S100PBPQ96BU1 408 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 HRH4Q9H3N8 390 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 DUSP13Q9UII6 198 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 RBM7Q9Y580 266 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms