RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C20orf196Q8IYI0 205 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 FAM89BQ8N5H3 189 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 TMEM156Q8N614 296 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 MOB1AQ9H8S9 216 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 GPR35Q9HC97 309 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 FKBP11Q9NYL4 201 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 TAS2R4Q9NYW5 299 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 LOXL2Q9Y4K0 774 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 TRAV9-1A0A075B6T8 112 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 LOC102723996A0A087X1L8 192 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 LIPT2A6NK58 231 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 K7EQM0 130 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ERI3O43414 337 aaKnown RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 HPRT1P00492 218 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 PRH1P02810 166 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 PGA4P0DJD7 388 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 PGA5P0DJD9 388 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CD99P14209 185 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CPMP14384 443 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CMPK1P30085 196 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SFTPDP35247 375 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CLDN6P56747 220 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 S100A10P60903 97 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ARF6P62330 175 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ZNF74Q16587 644 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 FAM90A2PQ658T7 463 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 RD3Q7Z3Z2 195 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR4D6Q8NGJ1 314 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR10AC1Q8NH08 325 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 KCNG3Q8TAE7 436 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 PTPMT1Q8WUK0 201 aaPredicted RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 MBD3L1Q8WWY6 194 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 MOB3AQ96BX8 217 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 C8orf44Q96CB5 159 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CTHRC1Q96CG8 243 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SLC25A44Q96H78 314 aaPredicted RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 DIRC2Q96SL1 478 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CMKLR1Q99788 373 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ASCL2Q99929 193 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SRSF8Q9BRL6 282 aaKnown RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 RBKSQ9H477 322 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 HRASLS2Q9NWW9 162 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 NAGKQ9UJ70 344 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 AKAP13Q12802 2813 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 NSG1A0A0A6YYJ2 146 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 MED19A0JLT2 244 aaPredicted RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 NPIPB13A6NJU9 1138 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 FOXI3A8MTJ6 420 aaPredicted RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 SERPINE3A8MV23 424 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 NPIPB4C9JG80 1138 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CEACAM4O75871 244 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 NXPH2O95156 264 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CDS2O95674 445 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 BCL6P41182 706 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 DNASE1L1P49184 302 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 POLR2HP52434 150 aaKnown RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 UCP3P55916 312 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 UNC119Q13432 240 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TMEM177Q53S58 311 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TEX38Q6PEX7 206 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 DHRS13Q6UX07 377 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TTLL10Q6ZVT0 673 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 S100A7AQ86SG5 101 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR2M7Q8NG81 312 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR5D18Q8NGL1 313 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR4D5Q8NGN0 318 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 NPRL2Q8WTW4 380 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TMEM186Q96B77 213 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SNX22Q96L94 193 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CABLES2Q9BTV7 478 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TTTY10Q9BZA0 68 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 MAGT1Q9H0U3 335 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 WFDC1Q9HC57 220 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 FAM60AQ9NP50 221 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 MTCH1Q9NZJ7 389 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ONECUT1Q9UBC0 465 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 IGKV3D-11A0A0A0MRZ8 115 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TRBV11-1A0A0K0K1C0 115 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CENPVL1A0A0U1RR11 272 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SLC33A1O00400 549 aaPredicted RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 XKRYO14609 159 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 KLK10O43240 276 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 YPEL1O60688 119 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 DUSP1P28562 367 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 PPP1CCP36873 323 aaKnown RBP4.56□□□□□ -1.68
USP28-213ENST00000544967 ATP5J2P56134 94 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 RAB38P57729 211 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 TMEM183BQ1AE95 376 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 C1orf140Q5VVS0 124 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ZNF343Q6P1L6 599 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 CYP2G1PQ6ZSU1 146 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 SSX7Q7RTT5 188 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 HMGN2P46Q86SG4 172 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 RTN4RL2Q86UN3 420 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR51L1Q8NGJ5 315 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR51A4Q8NGJ6 313 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR13G1Q8NGZ3 307 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 OR1L3Q8NH93 324 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 ERGIC1Q969X5 290 aa4.56□□□□□ -1.68
USP28-213ENST00000544967 C18orf12Q96KH6 178 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms