RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PAX8Q06710 450 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 CMTM4Q8IZR5 234 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 KIR3DL3Q8N743 410 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 DGCR14Q96DF8 476 aaKnown RBP24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 DMRTB1Q96MA1 342 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 TRGV10A0A0A0MS01 117 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 HIST1H1DP16402 221 aaKnown RBP24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 GLP1RP43220 463 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 CR1LQ2VPA4 569 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 METTL11BQ5VVY1 283 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 MZT2AQ6P582 158 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 PHF21AQ96BD5 680 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 SLIRPQ9GZT3 109 aaKnown RBP24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 ABCG5Q9H222 651 aa24.37■■□□□ 1.49
LIMCH1-211ENST00000509638 A0A1W2PPH5 198 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 GNB3P16520 340 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 OLFML2AQ68BL7 652 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 ZNF714Q96N38 554 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 ZMAT3Q9HA38 289 aaKnown RBP24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 OR6C3Q9NZP0 311 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 AK3Q9UIJ7 227 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 KPTNQ9Y664 436 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 AUP1Q9Y679 476 aa24.36■■□□□ 1.49
LIMCH1-211ENST00000509638 MFNGO00587 321 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 HPGDSO60760 199 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 CA11O75493 328 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 EIF4EP06730 217 aaKnown RBP24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 OR13A1Q8NGR1 328 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 SIRPDQ9H106 197 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 OPN4Q9UHM6 478 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 KCNK7Q9Y2U2 307 aa24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 UBE2J1Q9Y385 318 aaPredicted RBP24.35■■□□□ 1.49
LIMCH1-211ENST00000509638 TRAV39A0A0B4J263 110 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 MT-ND4P03905 459 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 CDK2P24941 298 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 GAPTQ8N292 157 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 WDFY2Q96P53 400 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 NCOR1P1Q9H4R4 102 aa24.34■■□□□ 1.49
LIMCH1-211ENST00000509638 M0R1W7 72 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 AVPP01185 164 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 ZNF728P0DKX0 622 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 MMP9P14780 707 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 OR4K15Q8NH41 348 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 MRPL30Q8TCC3 161 aaKnown RBP24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 MRGPRDQ8TDS7 321 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 CCDC107Q8WV48 283 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 HDHD3Q9BSH5 251 aaPredicted RBP24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 PCGF1Q9BSM1 259 aa24.33■■□□□ 1.49
LIMCH1-211ENST00000509638 A0A0A6YYH2 397 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 A6NJ64 397 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 TOX4O94842 621 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 APOA1P02647 267 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 DLX6P56179 175 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 Q8N7P7 452 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 S100A16Q96FQ6 103 aaKnown RBP24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 C12orf4Q9NQ89 552 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 MXRA5Q9NR99 2828 aa24.33■■□□□ 1.48
LIMCH1-211ENST00000509638 C1orf229Q6ZS94 237 aaPredicted RBP24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 CORO2AQ92828 525 aa24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 CMTM3Q96MX0 182 aa24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 C6orf62Q9GZU0 229 aaPredicted RBP24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 GAL3ST2Q9H3Q3 398 aa24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 CHMP1AQ9HD42 196 aaPredicted RBP24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 DIABLOQ9NR28 239 aa24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 TRAPPC2LQ9UL33 140 aa24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 ANK3Q12955 4377 aaKnown RBP24.32■■□□□ 1.48
LIMCH1-211ENST00000509638 A6NHS1 94 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 SERPINE3A8MV23 424 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 RGS5O15539 181 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 ELK1P19419 428 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 FAM120AOSQ5T036 256 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 VMO1Q7Z5L0 202 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 IZUMO1Q8IYV9 350 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 ZNF565Q8N9K5 539 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 TBX15Q96SF7 602 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 SIRT7Q9NRC8 400 aa24.31■■□□□ 1.48
LIMCH1-211ENST00000509638 CLPXO76031 633 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 NAPSAO96009 420 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 SSTR5P35346 364 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 DLX1P56177 255 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 ARL6IP1Q15041 203 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 CDNFQ49AH0 187 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 LAX1Q8IWV1 398 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 DTX3Q8N9I9 347 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 MCFD2Q8NI22 146 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 CMSS1Q9BQ75 279 aaKnown RBP24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 METTL8Q9H825 291 aaKnown RBP24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 TAS2R3Q9NYW6 316 aa24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 ELF5Q9UKW6 265 aaPredicted RBP24.3■■□□□ 1.48
LIMCH1-211ENST00000509638 TRAV18A0A075B6X5 111 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 TMEM235A6NFC5 223 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 TMEM69Q5SWH9 247 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 Q6ZPA2 131 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 IL17RELQ6ZVW7 336 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 C11orf42Q8N5U0 333 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 UPRTQ96BW1 309 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 TMEM160Q9NX00 188 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 CALYQ9NYX4 217 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 ZNF729A6NN14 1252 aaPredicted RBP24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms