RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 BTF3P20290 206 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 PKIAP61925 76 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 LSM6P62312 80 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 Q499Y3 187 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC35D3Q5M8T2 416 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC25A47Q6Q0C1 308 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC36A1Q7Z2H8 476 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 NMNAT2Q9BZQ4 307 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 ALX4Q9H161 411 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM38BQ9NVV0 291 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 CLCF1Q9UBD9 225 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 MRM2Q9UI43 246 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 PPIAL4AQ9Y536 164 aa7.5□□□□□ -1.21
LIMCH1-209ENST00000509277 A0A0G2JNJ9 132 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM8BA6NDV4 472 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 M0R1B8 84 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 DNPH1O43598 174 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 MPIG6BO95866 241 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 ITGA5P08648 1049 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 CELA3BP08861 270 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 ALOX5APP20292 161 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 FCGR2CP31995 323 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 EFNB1P98172 346 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 MFGE8Q08431 387 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 RIPPLY1Q0D2K3 151 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 ALKBH6Q3KRA9 238 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 Q5PR19 223 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM268Q5VZI3 342 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 SEM1Q6ZVN7 128 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 OR51A2Q8NGJ7 313 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 OR1J1Q8NGS3 322 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 ASB17Q8WXJ9 295 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 VPS25Q9BRG1 176 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 BANF2Q9H503 90 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 TUBA4BQ9H853 241 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 PLEKHA1Q9HB21 404 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 Q9UFV3 132 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 SHANK1Q9Y566 2161 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 CX3CR1P49238 355 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 RAB11AP62491 216 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 S100A7AQ86SG5 101 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 RTN4RL2Q86UN3 420 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 CYYR1Q96J86 154 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 BBC3Q96PG8 261 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 DHDHQ9UQ10 334 aa7.49□□□□□ -1.21
LIMCH1-209ENST00000509277 ABHD16AO95870 558 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 CALCBP10092 127 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ZNF20P17024 532 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 IGHV1-2P23083 117 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 CDX1P47902 265 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ZNF121P58317 390 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 RPUSD3Q6P087 351 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 OR5AS1Q8N127 324 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ADPRHL1Q8NDY3 354 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 GJC3Q8NFK1 279 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 OR51E1Q8TCB6 317 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 FBXL17Q9UF56 701 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 BSNQ9UPA5 3926 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 USP9XQ93008 2570 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 FAM221AA4D161 298 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 DBX1A6NMT0 343 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ZNF724A8MTY0 619 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PNPP00491 289 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H1BP16401 226 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PAX6P26367 422 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 CHATP28329 748 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PPP1CCP36873 323 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 TDGF1P3P51864 188 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PMS2P11Q13670 270 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 MEX3BQ6ZN04 569 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PEG10Q86TG7 708 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 MDP1Q86V88 176 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 OR10AD1Q8NGE0 317 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 GFI1Q99684 422 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 TAS2R4Q9NYW5 299 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ST6GALNAC2Q9UJ37 374 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 A1L4Q6 167 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 C9orf170A2RU37 121 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 C5orf63A6NC05 138 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PRSS47A8MTI9 375 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 HMGB3O15347 200 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 HSPA12AO43301 675 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 XRCC3O43542 346 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 CRHP06850 196 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 TRGC1P0CF51 173 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 RBMXP38159 391 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 DVL1P1P54792 670 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PSG4Q00888 419 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 TNFRSF9Q07011 255 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 CDC20BQ86Y33 519 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 IL22RA2Q969J5 263 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 STARD4Q96DR4 205 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 MUCL1Q96DR8 90 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 PRDM13Q9H4Q3 707 aa7.48□□□□□ -1.21
LIMCH1-209ENST00000509277 ZNF503-AS2A6NEH8 195 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 M0R135 149 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 GSTZ1O43708 216 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 IGHMP01871 453 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 HNF1AP20823 631 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms