RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	IGHV3-64D	A0A0J9YX35	117 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	PNMA8C	A0A1B0GUJ8	204 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525		A0A1B0GUS0	222 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525		A0A1W2PQ09	198 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SHISA3	A0PJX4	238 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	RAB27B	O00194	218 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TXNL1	O43396	289 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TCF21	O43680	179 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	AIRE	O43918	545 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	CDRT1	O95170	752 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	ZNF205	O95201	554 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	HTR3B	O95264	441 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	MT-ND4	P03905	459 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	RNASE1	P07998	156 aa	Known RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	MELTF	P08582	738 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	GSTP1	P09211	210 aa	Known RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	FBP1	P09467	338 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	NDUFB7	P17568	137 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SERPINA2	P20848	420 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	DTYMK	P23919	212 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	GABRR1	P24046	479 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	GADD45A	P24522	165 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SRP14	P37108	136 aa	Known RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	MNDA	P41218	407 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SERPINB10	P48595	397 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	COMP	P49747	757 aa	Predicted RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	ARHGDIB	P52566	201 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	INSL4	Q14641	139 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	NEDD8	Q15843	81 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	CTF1	Q16619	201 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	PNLIPRP3	Q17RR3	467 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	PIGY	Q3MUY2	71 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	PAN3	Q58A45	887 aa	Known RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	KRBOX4	Q5JUW0	171 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	FAM27D1	Q5T7N8	215 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	C22orf42	Q6IC83	251 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	CCDC144NL	Q6NUI1	221 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	C11orf88	Q6PI97	169 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525		Q6YL49	198 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	LINC00299	Q6ZSB3	139 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	C16orf82	Q7Z2V1	217 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	VMO1	Q7Z5L0	202 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SATL1	Q86VE3	508 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	NR2C2AP	Q86WQ0	139 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	BOLL	Q8N9W6	283 aa	Known RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SUMF2	Q8NBJ7	301 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TMEM104	Q8NE00	496 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	C15orf40	Q8WUR7	153 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SSMEM1	Q8WWF3	244 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	AP3S1	Q92572	193 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TMEM203	Q969S6	136 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SLC25A46	Q96AG3	418 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SEH1L	Q96EE3	360 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	KIRREL1	Q96J84	757 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	NEDD4L	Q96PU5	975 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	FUNDC2	Q9BWH2	189 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	SELENOI	Q9C0D9	397 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	CHST6	Q9GZX3	395 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	DCSTAMP	Q9H295	470 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TMEM133	Q9H2Q1	129 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	LIN7B	Q9HAP6	207 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	RAB18	Q9NP72	206 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	C12orf4	Q9NQ89	552 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	ZNRD1	Q9P1U0	126 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	OR14J1	Q9UGF5	321 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	JPT1	Q9UK76	154 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	ADAM30	Q9UKF2	790 aa		4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	4.16	□□□□□ -1.74
HDAC6-223	ENST00000480525	TRAV40	A0A0B4J280	105 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525		A0A1B0GW55	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525		A0A1W2PPK0	400 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	RNASEK-C17orf49	H0YIS7	233 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	C15orf65	H3BRN8	121 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525		H3BSH0	61 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	TRIM77	I1YAP6	450 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	MFNG	O00587	321 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	NPFF	O15130	113 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	YPEL1	O60688	119 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	CRTAP	O75718	401 aa	Predicted RBP	4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	RGS11	O94810	467 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	APOA1	P02647	267 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	CTXN2	P0C2S0	81 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L2	P0CJ85	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L3	P0CJ86	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L4	P0CJ87	422 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L5	P0CJ88	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L6	P0CJ89	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	DUX4L7	P0CJ90	424 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	SELL	P14151	372 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	SDC2	P34741	201 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	CEACAM3	P40198	252 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	KIR2DS4	P43632	304 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	ARF6	P62330	175 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	ZNF273	Q14593	569 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	KIR2DS1	Q14954	304 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	HMGN3	Q15651	99 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	MSMO1	Q15800	293 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	TAF9	Q16594	264 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	C17orf58	Q2M2W7	97 aa		4.15	□□□□□ -1.75
HDAC6-223	ENST00000480525	C2orf76	Q3KRA6	126 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms