RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 MED19A0JLT2 244 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ANKRD20A5PA0PJZ0 165 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 FUOMA2VDF0 154 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TMEM235A6NFC5 223 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 A6NLC8 198 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ZNF732B4DXR9 585 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TRAPPC2LH3BP13 241 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SULT1C2O00338 296 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 VCYO14598 125 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 LDLRAD4O15165 306 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ANGPTL7O43827 346 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ORC5O43913 435 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SSX4O60224 188 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ZNF780AO75290 641 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TPPPO94811 219 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 DHFRP00374 187 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 CST4P01036 141 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 NGFP01138 241 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 IGKV3-15P01624 115 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MT-ND4P03905 459 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 AKAIN1P0CW23 69 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PTHLHP12272 177 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SPNP16150 400 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PSMB1P20618 241 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TUBG1P23258 451 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 GABRR1P24046 479 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 BLVRBP30043 206 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RCVRNP35243 200 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 WNT5AP41221 380 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PTGFRP43088 359 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 CA7P43166 264 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RAD52P43351 418 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SRP9P49458 86 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 HOXA1P49639 335 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ASCL1P50553 236 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 BCAP31P51572 246 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SNU13P55769 128 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 UCP2P55851 309 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TAS2R19P59542 299 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 KRTAP10-5P60370 271 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ERVS71-1P61550 626 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RPS27AP62979 156 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 GNG3P63215 75 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SSBP1Q04837 148 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PLA2G7Q13093 441 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 UNC119Q13432 240 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 OR8G1Q15617 311 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 CEACAM21Q3KPI0 293 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MOGAT2Q3SYC2 334 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 OLFML2AQ68BL7 652 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TMEM42Q69YG0 159 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SIGIRRQ6IA17 410 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 OR2T2Q6IF00 324 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 FIP1L1Q6UN15 594 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 C16orf54Q6UWD8 224 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 NCCRP1Q6ZVX7 275 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 GDPD3Q7L5L3 318 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SSX8Q7RTT4 187 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MYPOPQ86VE0 399 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 DOLPP1Q86YN1 238 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MKXQ8IYA7 352 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 C1orf174Q8IYL3 243 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 WDR31Q8NA23 367 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RELL2Q8NC24 303 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ST6GALNAC3Q8NDV1 305 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PXT1Q8NFP0 134 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 OR10R2Q8NGX6 335 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 CMBLQ96DG6 245 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RAB3CQ96E17 227 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RADILQ96JH8 1075 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RNF170Q96K19 258 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 NEDD4LQ96PU5 975 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 FAM110AQ9BQ89 295 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 NUDT16L1Q9BRJ7 211 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 OR2J1Q9GZK6 312 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 LPAR5Q9H1C0 372 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 PRORYQ9H606 182 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SCPEP1Q9HB40 452 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 NGBQ9NPG2 151 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TUBG2Q9NRH3 451 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RBFOX1Q9NWB1 397 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MCUBQ9NWR8 336 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 TMEM160Q9NX00 188 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MRPL15Q9P015 296 aaKnown RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 COPZ2Q9P299 210 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SLC25A10Q9UBX3 287 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ZNF629Q9UEG4 869 aaPredicted RBP3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 ZNF835Q9Y2P0 537 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 POLDIP2Q9Y2S7 368 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 STARD10Q9Y365 291 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 RHBDD3Q9Y3P4 386 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 SLC25A15Q9Y619 301 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 MUC3AQ02505 3323 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 FREM1Q5H8C1 2179 aa3.18□□□□□ -1.9
HMGB3P20-201ENST00000417997 GTF3C1Q12789 2109 aa3.17□□□□□ -1.9
HMGB3P20-201ENST00000417997 TRAV6A0A075B6T7 132 aa3.17□□□□□ -1.9
HMGB3P20-201ENST00000417997 IGHV2OR16-5A0A0B4J2B6 119 aa3.17□□□□□ -1.9
HMGB3P20-201ENST00000417997 hCG_1807616A0A1W2PRN6 198 aa3.17□□□□□ -1.9
HMGB3P20-201ENST00000417997 PQLC2LA1A4F0 135 aa3.17□□□□□ -1.9
HMGB3P20-201ENST00000417997 MEIOCA2RUB1 952 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms