RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PHF1O43189 567 aaPredicted RBP18.35■□□□□ 0.53
TRIM54-202ENST00000380075 TUSC2O75896 110 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 HOXD4P09016 255 aaPredicted RBP18.35■□□□□ 0.53
TRIM54-202ENST00000380075 CA6P23280 308 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 KCNJ3P48549 501 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 CISD2Q8N5K1 135 aaKnown RBP18.35■□□□□ 0.53
TRIM54-202ENST00000380075 ZNF565Q8N9K5 539 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 SUMF2Q8NBJ7 301 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 IL36RNQ9UBH0 155 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 LRP5LA4QPB2 252 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 LILRA1O75019 489 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 SELEP16581 610 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 PPP1CBP62140 327 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 FAM76BQ5HYJ3 339 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 LYZL2Q7Z4W2 148 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 FOXRED2Q8IWF2 684 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 TMED6Q8WW62 240 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 SARAFQ96BY9 339 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 SAT2Q96F10 170 aaPredicted RBP18.34■□□□□ 0.53
TRIM54-202ENST00000380075 TRIB1Q96RU8 372 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 POLDIP2Q9Y2S7 368 aa18.34■□□□□ 0.53
TRIM54-202ENST00000380075 LSM5Q9Y4Y9 91 aaKnown RBP18.34■□□□□ 0.53
TRIM54-202ENST00000380075 GPR31O00270 319 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 JTBO76095 146 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 RAC2P15153 192 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 IL32P24001 234 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 GNRHRP30968 328 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 PRR30Q53SZ7 412 aaPredicted RBP18.33■□□□□ 0.53
TRIM54-202ENST00000380075 C1orf162Q8NEQ5 155 aaPredicted RBP18.33■□□□□ 0.53
TRIM54-202ENST00000380075 OR1S2Q8NGQ3 325 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 OR11L1Q8NGX0 322 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 ARL11Q969Q4 196 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 OR51B6Q9H340 312 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 ASF1BQ9NVP2 202 aa18.33■□□□□ 0.53
TRIM54-202ENST00000380075 DUXBA0A1W2PPF3 345 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 CDS2O95674 445 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 MBPP02686 304 aaPredicted RBP18.33■□□□□ 0.52
TRIM54-202ENST00000380075 SCTP09683 121 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 MDH2P40926 338 aaKnown RBP18.33■□□□□ 0.52
TRIM54-202ENST00000380075 GABRA6Q16445 453 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 ZNF880Q6PDB4 577 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 SPERTQ8NA61 448 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 OR4A4PQ8NGN8 299 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 MRPL30Q8TCC3 161 aaKnown RBP18.33■□□□□ 0.52
TRIM54-202ENST00000380075 TMEM222Q9H0R3 208 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 TAF9BQ9HBM6 251 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 TREM2Q9NZC2 230 aa18.33■□□□□ 0.52
TRIM54-202ENST00000380075 PIGBOS1A0A0B4J2F0 54 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 FAM157CP0CG43 387 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 GPR157Q5UAW9 335 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 WNT2BQ93097 391 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 SNRNP40Q96DI7 357 aaKnown RBP18.32■□□□□ 0.52
TRIM54-202ENST00000380075 TMEM56Q96MV1 263 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 OR2S2Q9NQN1 319 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 TMEM56-RWDD3S4R434 201 aa18.32■□□□□ 0.52
TRIM54-202ENST00000380075 TRAV24A0A0B4J272 114 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 BET1O15155 118 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SCGB1D2O95969 90 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 HERPUD1Q15011 391 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 TSC22D1Q15714 1073 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 TP53RKQ96S44 253 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SPIN2AQ99865 258 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SPIN2BQ9BPZ2 258 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 LPAR3Q9UBY5 353 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 AMDHD2Q9Y303 409 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SPEF1Q9Y4P9 236 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 IQCF6A8MYZ5 107 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 ST8SIA3O43173 380 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 WISP2O76076 250 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 IDH3GP51553 393 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SPATA46Q5T0L3 261 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 SHEQ5VZ18 495 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 RPL7L1Q6DKI1 246 aaKnown RBP18.31■□□□□ 0.52
TRIM54-202ENST00000380075 OR2A2Q6IF42 318 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 MOB1BQ7L9L4 216 aa18.31■□□□□ 0.52
TRIM54-202ENST00000380075 CFAP46Q8IYW2 2715 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 CBR1P16152 277 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 COX5AP20674 150 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 TUBG1P23258 451 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 HOXC12P31275 282 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 P2RY1P47900 373 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 IL34Q6ZMJ4 242 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 TBC1D26Q86UD7 250 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 GCNT2Q8N0V5 402 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 SLC35G3Q8N808 338 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 SECTM1Q8WVN6 248 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 ZNF488Q96MN9 340 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 OR2J1Q9GZK6 312 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 MMP26Q9NRE1 261 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 TUBG2Q9NRH3 451 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 FBXL17Q9UF56 701 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 TMEM210A6NLX4 147 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 HSPB6O14558 160 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 DEGS1O15121 323 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 GPR137BO60478 399 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 CELA3BP08861 270 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 S100GP29377 79 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 TMEM33P57088 247 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 HLA-DRB3P79483 266 aa18.3■□□□□ 0.52
TRIM54-202ENST00000380075 SPIN3Q5JUX0 258 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms