RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 GRK1Q15835 563 aa15.53■□□□□ 0.08
CLN3-206ENST00000360019 HFEQ30201 348 aa15.53■□□□□ 0.08
CLN3-206ENST00000360019 CCDC107Q8WV48 283 aa15.53■□□□□ 0.08
CLN3-206ENST00000360019 SNX22Q96L94 193 aa15.53■□□□□ 0.08
CLN3-206ENST00000360019 SCP2D1Q9UJQ7 156 aa15.53■□□□□ 0.08
CLN3-206ENST00000360019 TRAV38-1A0A0B4J264 116 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 H7C1Q1 480 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 CDKN1AP38936 164 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 TLE4Q04727 773 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 ZMYND11Q15326 602 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 SLC35E4Q6ICL7 350 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 ZNF788Q6ZQV5 615 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 ZNF561Q8N587 486 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 CCL13Q99616 98 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 CLEC4MQ9H2X3 399 aaPredicted RBP15.52■□□□□ 0.08
CLN3-206ENST00000360019 PLEKHF2Q9H8W4 249 aa15.52■□□□□ 0.08
CLN3-206ENST00000360019 HELZ2Q9BYK8 2649 aaKnown RBP15.52■□□□□ 0.08
CLN3-206ENST00000360019 TMEM30CPA0ZSE6 113 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 TRDCB7Z8K6 153 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 K7N7A8 449 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 RP2O75695 350 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 SCTP09683 121 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 H2AFB2P0C5Z0 115 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 PAX5Q02548 391 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 FAM216BQ8N7L0 139 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 TPRX1Q8N7U7 411 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 MBNL3Q9NUK0 354 aaKnown RBP15.52■□□□□ 0.07
CLN3-206ENST00000360019 NECAP2Q9NVZ3 263 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 KIF25Q9UIL4 384 aa15.52■□□□□ 0.07
CLN3-206ENST00000360019 POM121CA8CG34 1229 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 J3QKU1 62 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 ARPC1BO15143 372 aaKnown RBP15.51■□□□□ 0.07
CLN3-206ENST00000360019 FABP7O15540 132 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 TK1P04183 234 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 OR5H8P0DN80 308 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 TSPAN5P62079 268 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 HERPUD1Q15011 391 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 TATDN3Q17R31 274 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 IGSF11Q5DX21 431 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 KRBOX4Q5JUW0 171 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 ATPAF1Q5TC12 328 aaPredicted RBP15.51■□□□□ 0.07
CLN3-206ENST00000360019 LHFPL1Q86WI0 220 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 CADM3Q8N126 398 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 NEU4Q8WWR8 484 aaPredicted RBP15.51■□□□□ 0.07
CLN3-206ENST00000360019 LIME1Q9H400 295 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 ZNF665Q9H7R5 613 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 TRAPPC2LQ9UL33 140 aa15.51■□□□□ 0.07
CLN3-206ENST00000360019 KIR2DS1A0A191URI9 304 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 FUOMA2VDF0 154 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 KIR2DS4P43632 304 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 GLIPR1P48060 266 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 HLA-DRB3P79483 266 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 EDDM3AQ14507 147 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 KIR2DS1Q14954 304 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 ZNF660Q6AZW8 331 aaPredicted RBP15.5■□□□□ 0.07
CLN3-206ENST00000360019 SP5Q6BEB4 398 aaPredicted RBP15.5■□□□□ 0.07
CLN3-206ENST00000360019 MOB1BQ7L9L4 216 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 TERB2Q8NHR7 220 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 PPP1R35Q8TAP8 253 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 SLC25A21Q9BQT8 299 aaPredicted RBP15.5■□□□□ 0.07
CLN3-206ENST00000360019 VPS13CQ709C8 3753 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 KIAA2026Q5HYC2 2103 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 MEIKINA0A087WXM9 373 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 IGKV1-6A0A0C4DH72 117 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 TNFRSF13BO14836 293 aaPredicted RBP15.5■□□□□ 0.07
CLN3-206ENST00000360019 MGST3O14880 152 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 SIGLEC5O15389 551 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 BCAP31P51572 246 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 RAG2P55895 527 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 BTG1P62324 171 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 AADACL3Q5VUY0 350 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 DLL4Q9NR61 685 aa15.5■□□□□ 0.07
CLN3-206ENST00000360019 TMPRSS2O15393 492 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 PEX14O75381 377 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 COX6B1P14854 86 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 TMEM17Q86X19 198 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 TMEM185AQ8NFB2 350 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 IGFBPL1Q8WX77 278 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 BEX2Q9BXY8 128 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 TMPRSS13Q9BYE2 586 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 BEX1Q9HBH7 125 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 VSIG4Q9Y279 399 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 FBN2P35556 2912 aa15.49■□□□□ 0.07
CLN3-206ENST00000360019 NBPF19A0A087WUL8 3843 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 OR5H14A6NHG9 310 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 NDUFS7O75251 213 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 DAOP14920 347 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 ANXA7P20073 488 aaKnown RBP15.48■□□□□ 0.07
CLN3-206ENST00000360019 MECP2P51608 486 aaKnown RBP15.48■□□□□ 0.07
CLN3-206ENST00000360019 IL13RA1P78552 427 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 MRPS11P82912 194 aaKnown RBP15.48■□□□□ 0.07
CLN3-206ENST00000360019 HMGN3Q15651 99 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 CARTPTQ16568 116 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 DHRS11Q6UWP2 260 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 OR6F1Q8NGZ6 308 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 GIMAP1Q8WWP7 306 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 TMEM246Q9BRR3 403 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 ZNF2Q9BSG1 426 aaPredicted RBP15.48■□□□□ 0.07
CLN3-206ENST00000360019 DNTTIP1Q9H147 329 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 ALG5Q9Y673 324 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 257.6 ms