RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 OR13C5Q8NGS8 318 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 ZNF596Q8TC21 504 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 TMEM106AQ96A25 262 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 ORAI1Q96D31 301 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 KIRREL1Q96J84 757 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 GPER1Q99527 375 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 KBTBD11-OT1A0A1B0GTJ5 212 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 ADARB2-AS1A8MUL3 147 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 G3V4G9 280 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 LY6LH3BQJ8 138 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 BUB1B-PAK6H3BSN5 160 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 MAGEB3O15480 346 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 FBXO24O75426 580 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 CDRT1O95170 752 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OPN1MWP04001 364 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 ALDOBP05062 364 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OPN1MW2P0DN77 364 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OPN1MW3P0DN78 364 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 ADARB1P78563 741 aaKnown RBP8.66□□□□□ -1.02
VPS39-208ENST00000564994 IL13RA2Q14627 380 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 RSU1Q15404 277 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 HLA-DRB5Q30154 266 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 NSUN5P1Q3KNT7 163 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 PAN3Q58A45 887 aaKnown RBP8.66□□□□□ -1.02
VPS39-208ENST00000564994 TPTE2P1Q5T6R2 138 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 RSBN1Q5VWQ0 802 aaPredicted RBP8.66□□□□□ -1.02
VPS39-208ENST00000564994 LAIR2Q6ISS4 152 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 TMPRSS11AQ6ZMR5 421 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 ZNF485Q8NCK3 441 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OR4D6Q8NGJ1 314 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OR13A1Q8NGR1 328 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 PLPPR1Q8TBJ4 325 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 STMN2Q93045 179 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 LEAP2Q969E1 77 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 SMIM19Q96E16 107 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 CITED2Q99967 270 aaPredicted RBP8.66□□□□□ -1.02
VPS39-208ENST00000564994 OCSTAMPQ9BR26 566 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 FAM192AQ9GZU8 254 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 BABAM2Q9NXR7 383 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 CALYQ9NYX4 217 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 OR6C3Q9NZP0 311 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 KIF25Q9UIL4 384 aa8.66□□□□□ -1.02
VPS39-208ENST00000564994 DIMT1Q9UNQ2 313 aaKnown RBP8.66□□□□□ -1.02
VPS39-208ENST00000564994 MEIKINA0A087WXM9 373 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 A0A1W2PP11 408 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 MAGEA13PA6NCF6 341 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 LEUTXA8MZ59 168 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 HTR3BO95264 441 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 IGHV3-7P01780 117 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 AMY1AP04745 511 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 AMY2AP04746 511 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 CD2P06729 351 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 IGFBP3P17936 291 aaPredicted RBP8.65□□□□□ -1.02
VPS39-208ENST00000564994 NFYBP25208 207 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 GLP1RP43220 463 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 RPS11P62280 158 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS39-208ENST00000564994 PAX5Q02548 391 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 DOC2BQ14184 412 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 DDI2Q5TDH0 399 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 DMKNQ6E0U4 476 aaPredicted RBP8.65□□□□□ -1.02
VPS39-208ENST00000564994 ZFP41Q8N8Y5 198 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 CYGBQ8WWM9 190 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 GGHQ92820 318 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 GHSRQ92847 366 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 CPNE2Q96FN4 548 aaPredicted RBP8.65□□□□□ -1.02
VPS39-208ENST00000564994 TMEM80Q96HE8 168 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 PGLYRP3Q96LB9 341 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 MMP28Q9H239 520 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 NCOR1P1Q9H4R4 102 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 LINC00574Q9H8X3 128 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 LIN7BQ9HAP6 207 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 TMEM138Q9NPI0 162 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 ZNF281Q9Y2X9 895 aa8.65□□□□□ -1.02
VPS39-208ENST00000564994 EXOSC1Q9Y3B2 195 aaKnown RBP8.65□□□□□ -1.02
VPS39-208ENST00000564994 TRAV39A0A0B4J263 110 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 TRBV5-5A0A0J9YX44 114 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 IRGMA1A4Y4 181 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 SH2D7A6NKC9 451 aaPredicted RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 NPIPB11E5RHQ5 1161 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 TOR1AO14656 332 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 GEMIN2O14893 280 aaKnown RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 IL1AP01583 271 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 GNAO1P09471 354 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 MYL12AP19105 171 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 BDKRB2P30411 391 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 BRS3P32247 399 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 ZNF93P35789 620 aaPredicted RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 VDAC2P45880 294 aaPredicted RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 PRRX1P54821 245 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 DIAPH2-AS1Q14236 149 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 RBM39Q14498 530 aaKnown RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 LTC4SQ16873 150 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 BEAN1Q3B7T3 259 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 ARSJQ5FYB0 599 aaPredicted RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 NHLRC3Q5JS37 347 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 SAMD5Q5TGI4 173 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 TTC23Q5W5X9 447 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 C16orf82Q7Z2V1 217 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 NDUFA11Q86Y39 141 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 OSR2Q8N2R0 312 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms